Sequence
atgc intronic sequence ATGC exonic sequencegtaagttacaggatggttctatctgtgcttccgttatgtcttcacctatatccaatgattaaagcatatcaaactggcatgcaccatgttagaatttgaatggattgatgtcattgcttgctgtctaactgcatgatttgacatttagattactctgctgcagGAAAACATGACTCGGATGCTGATGGTGTCCGATGTGCAGGATATTATTAAAAGACATCAGGCTCAAATCATAACCTCACTGAAGGATCCTGACATCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0061g01170.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GRMZM2G137236_T01 (Zea mays), 3'ss of exon 10
gtaagttacaggatggttctatctgtgcttccgttatgtcttcacctatatccaatgattaaagcatatcaaactggcatgcaccatgttagaatttgaatggattgatgtcattgcttgctgtctaactgcatgatttgacatttagattactctgctgcagGAAAACATGACTCGGATGCTGATGGTGTCCGATGTGCAGGATATTATTAAAAGACATCAGGCTCAAATCATAACCTCACTGAAGGATCCTGACATCAG
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------------------------gtaattgcatttcttattaatgtttact---tgattaacaccttttg--ctggca---gtcttgct----ttcacatcaagttgtgcaagtg--tacaatttatcatattgaaacagtaatc-gatccatct--ttcagGAAAACATGACTAGGATGCTGTTAGTAACAGATGTGCAGGATATCATTAAAAGGCACCAGGCTCAGATCATCACATCTTTGAAGGATCCAGATATCAG
upper sequence: Vv06s0061g01170.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GRMZM2G700148_T01 (Zea mays), 3'ss of exon 9
gtaagttacaggatggttctatctgtgcttccgttatgtcttcacctatatccaatgattaaagcatatcaaactggcatgcaccatgttagaatttgaatggattgatgtcattgcttgctgtctaactgcatgatttgacatttagattactctgctgcagGAAAACATGACTCGGATGCTGATGGTGTCCGATGTGCAGGATATTATTAAAAGACATCAGGCTCAAATCATAACCTCACTGAAGGATCCTGACATCAG
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------------------------gtaattgcatt----tcttattaatatttact---taatgccttttg--ctggca---gtcttgct----tccgcatcaagttgtgcaagtg--taaaatctacc---atattgagacagtaatcgatccatctttcagGAAAACATGACTAGGATGCTGTTAGTAACAGATGTGCAGGATATCATTAGAAGGCACCAGGCCCAGATCATTACATCTTTGAAGGATCCAGATATCAG
upper sequence: Vv06s0061g01170.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA17G05410.1 (Glycine max), 3'ss of exon 9
---------gtaagttacaggatggttctatctgtg-cttccgttatgtcttcacctatatccaatgattaaa--------gcatatcaaa---ctggcatgcaccatgttagaatt-tgaatggattgatgtcattgcttgctgtctaactgcatgatt--------tgacatttagattactctgctgcagGAAAACATGACTCGGATGCTGATGGTGTCCGATGTGCAGGATATTATTAAAAGACATCAGGCTCAAATCATAACCTCACTGAAGGATCCTGACATCAG
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gtaagtcggggggcatacttgattaatccatatttctcttttcttgttcttttatttctgtttgaaggagggacaaggattgcatgcccaatttctgcagtagatttcattatcatagtagaaggcttggtggtggtggtggttgtcataatgcaatgtcccagttcataacatatatgctattatggtgcagGAGAATATGACAAGAATGTTGATGGTTACTGATGTACAAGATATCATTAAAAGACATCAAGCTCAGATTATTACCTCATTGAAGGATCCTGACATCAG
upper sequence: Vv06s0061g01170.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA12G30520.1 (Glycine max), 3'ss of exon 9
gtaagttacaggatggttctatctgtgcttccgttatgtcttcacctatatccaatgattaaagcatatcaaactggcatgcaccatgttagaatttgaatggattgatgtcattgcttgctgtctaactgcatgatttgacatttagattactctgctgcagGAAAACATGACTCGGATGCTGATGGTGTCCGATGTGCAGGATATTATTAAAAGACATCAGGCTCAAATCATAACCTCACTGAAGGATCCTGACATCAG
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---------------------------------------------------------atttcattgtatcatagtt-tagaaggcttggtggtggttgtggttgtggttgtcataatgcaatgtctcagttcataa-----catatatgctattgcggtgcagGAGAATATGACAAGAATGTTGATGGTTACTGATGTACAAGATATCATAAAAAGACATCAAGCTCAGATTATTACCTCATTGAAGGATCCTGACATCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71857368|gb|DT006423.1|DT006423EST: TTGGGAAATTTATTGCTGTACGAGAGCCAAATATACGATATCTTGGTTTG GAAAACATGACTCGGATGCTGATGGTGTCCGATGTGCAGGATATTATTAAA
genomic: TTGGGAAATTTATTGCTGTACGAGAGCCAAATATACGATATCTTGGTTTGgtaagttaca ... tctgctgcagGAAAACATGACTCGGATGCTGATGGTGTCCGATGTGCAGGATATTATTAAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtcattgcttgctgtctaactgcatgatttgacatttagattactctgctgcagGAAAACATGACTCGGATGCTGATGGTGTCCGATGTGCAGGATATTATTAAAAGACATCAGGCTCAAATCATAACCTCACTGAAGGATCCTGACATCAG
ttactct CT-rich tract
atttagatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagttacaggatggttctatctgtgcttccgttatgtcttcacctatatccaatgattaaagcatatcaaactggcatgcaccatgttagaatttgaatggattgatgtcattgcttgctgtctaactgcatgatttgacatttagattactctgctgcagGAAAACATGACTCGGATGCTGATGGTGTCCGATGTGCAGGATATTATTAAAAGACATCAGGCTCAAATCATAACCTCACTGAAGGATCCTGACATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG