Sequence
atgc intronic sequence ATGC exonic sequence...acaaattattgttgtctctatttaatctcttgatagttgacatatcccttctgattgaccctgggaatcaaggcatgagttgttgttggttttgttacagGTTGCTCTTGTAGCCCTGGCAACAAGTCCATCATTCCACAAGGATCTATTGTCAACTGTTAAATCTTGGCCACCTGTGATTTATTCTGCATTGCCTGTTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0061g00940.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA11G19660.2 (Glycine max), 3'ss of exon 9
----------acaaattattgttgtctctatttaatctcttgatagttgacatatcccttctgattgaccctgggaatcaaggcatgagttgttgttggttttgttacagGTTGCTCTTGTAGCCCTGGCAACAAGTCCATCATTCCACAAGGATCTATTGTCAACTGTTAAATCTTGGCCACCTGTGATTTATTCTGCATTGCCTGTTA
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gttagctaaaacaaagtgttctctgtcacaattaatgtgtt--tgcttag--tatctgtaatgaactgacttgggataaaaaatattttatgctgcttttggttctacagGTTGCTCTCGTTGCATTGGCTACAAATCCTTCTTTTCATAAGGATCTCTTGTCCACTGTAAAATCCTGGCCATCTGTAATTTATTCTGCATTACCTGTAA
upper sequence: Vv06s0061g00940.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA12G08840.1 (Glycine max), 3'ss of exon 9
-----acaaattattgttgtctctatttaatctcttgatagttgacatatcccttctgattgaccctgggaatcaaggcatgagttgttgttggttttgttacagGTTGCTCTTGTAGCCCTGGCAACAAGTCCATCATTCCACAAGGATCTATTGTCAACTGTTAAATCTTGGCCACCTGTGATTTATTCTGCATTGCCTGTTA
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gttagctaaaacaaagttttctctgtcacaattatgtgtttgtgtagtatctgtaatgaactgacttgggataaaaaatcttttatgctgcttttggttctacagGTTGCTCTTGTTGCATTGGCTACAAATCCTTCTTTTCATAAGGATCTCTTGTCCACTGTAAAATCCTGGCCATCTGTAATTTATTCTGCTTTACCTGTAA
upper sequence: Vv06s0061g00940.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT1G08190.1 (Arabidopsis thaliana), 3'ss of exon 9
----------------------------------------------------------------------acaaattattgttgtctctatttaatctcttgatagttgacatatccctt--ctgattgaccctgggaatcaaggcatgagttgttgttggttttgttacagGTTGCTCTTGTAGCCCTGGCAACAAGTCCATCATTCCACAAGGATCTATTGTCAACTGTTAAATCTTGGCCACCTGTGATTTATTCTGCATTGCCTGTTA
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gtttgtatatatcaacaactttctacagataggcttaaatgaaaatattttatttcatagaaattttaaaatagataagtaaaaaaaaaaacttttcttgtaaacgcaaacatttgtttgaaacagtggaggcataagatttat-cttgaagtttatttctttacgatgcagGTTGCTCTAGTTGCACTAGCAACCAATCCCTCATACCACAAGGAGCTTTTGTCAGCGGTTAAATCTTGGCCACGTTCTGTATATTCTGCTTTGACTGTTAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161719571|gb|FC069391.1|FC069391EST: AGAGAACCCAAGATTGCGTGATACTGCTTATGAG GTTGCTCTTGTAGCCCTGGCAACAAGTCCATCATTCCACAAGGATCTATTG
genomic: AGAGAATCCAAGATTGCGTGATACTGCTTATGAGgtttgtaatg ... tttgttacagGTTGCTCTTGTAGCCCTGGCAACAAGTCCATCATTCCACAAGGATCTATTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cccttctgattgaccctgggaatcaaggcatgagttgttgttggttttgttacagGTTGCTCTTGTAGCCCTGGCAACAAGTCCATCATTCCACAAGGATCTATTGTCAACTGTTAAATCTTGGCCACCTGTGATTTATTCTGCATTGCCTGTTA
gattgac putative branch site (score: 3)
ttttgtt putative PPT
ttttgtta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
acaaattattgttgtctctatttaatctcttgatagttgacatatcccttctgattgaccctgggaatcaaggcatgagttgttgttggttttgttacagGTTGCTCTTGTAGCCCTGGCAACAAGTCCATCATTCCACAAGGATCTATTGTCAACTGTTAAATCTTGGCCACCTGTGATTTATTCTGCATTGCCTGTTA
acaaatt
- - - - -tgttgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gaccctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttggt