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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgtgacttgcaaatatttctaataacatttttatatttgaaaaaaaaataaaaattgattgaatttctttgagtaagctttttaactttatgtggacagGCTGGTACTCTTATCTATGGCTGCCATTCATCCCACTGATT

Basic information

species Vitis vinifera
transcript Vv06s0004g03100.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g03100.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA12G29310.1 (Glycine max), 3'ss of exon 9
--------------gtgagtgtgacttgcaaatatttctaataacatt-tttatatttgaaaaaaaaataaaaattgattgaatttctttgagt---aagctttttaactttatgtggacagGCTGGTACTCTTATCTATGGCTGCCATTCATCCCACTGATT
               | | | | |      | ||     ||| || || || ||| ||   ||    ||| || |  |   |  | | |  | |      | |  |   | ||| ||||||||||||||||||||||| |||||||||||    ||  |||||
gtaagggaatatatcttattataataaatcactaagctaaatcactttattgataattattaagtgtatacaactctacatatatacctaaatttccgtacatcgtttgtatatatggacagGCTGGTACTCTTATCTGTGGCTGCCATTTGCTCCTTTGATT

upper sequence: Vv06s0004g03100.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA12G07530.1 (Glycine max), 3'ss of exon 9
------------------gtga-gtgtgacttgcaaatatttctaataacatttttatattt-----gaaaaaaaaataaaaattgattgaatttctttg--agtaagctttttaactttatgtggacagGCTGGTACTCTTATCTATGGCTGCCATTCATCCCACTGATT
                   | | ||||  |   |  || |  || || |  |||||   |||     |   ||  | |    |||  ||  || |  ||   |  | |  | | || | |   |||||||| |||||||||||||| |||||||||||||| ||  |||||
gtaagcaactacatctttctaacgtgttgccgacgtatttgactcattattttttttcgtttttttgggttaaggactcgttattatttttatatacttactataatgtgtctcaattatgcatggacagGGTGGTACTCTTATCTGTGGCTGCCATTCATTCCTTTGATT

upper sequence: Vv06s0004g03100.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA11G15920.1 (Glycine max), 3'ss of exon 9
----------------gtgagtgtgacttgcaaat-atttctaataacatttttatatttgaaaaaaaaataaaaattgattgaatttctttgagtaagctttttaactttatgtggacagGCTGGTACTCTTATCTATGGCTGCCATTCATCCCACTGATT
                |     ||   |  |  || |||| |  |  | ||||| | ||||   ||  |       |   ||  ||   |   |  | |  | | || | |   |||||||| |||||||||||||| |||||||||||||| ||  |||||
gtctttctaatgtgttgccgacgtatttgactcattattttttcttccttttttttttttggttaagGACCCTTTTTAATTTATATACTTACTATGATGTGTCTCAATTATGCATGGACAGGGTGGTACTCTTATCTGTGGCTGCCATTCATTCCTTTGATT

upper sequence: Vv06s0004g03100.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA13G40300.1 (Glycine max), 3'ss of exon 9
gtgagtgtg-acttgcaaatatttctaataacatttttatatttgaaaaaaaaataaaaattgattgaatttc-tttgagtaagctttttaactttatgtggacagGCTGGTACTCTTATCTATGGCTGCCATTCATCCCACTGATT
|| || |   || |   |  ||  || |  |   |     |||| |   |  | |||   |  |   | || | |||  |||     |||     ||| ||||||||||||||||||||||| ||| |||||||    ||  |||||
gtaagcgaatacatcttataataactcactaagctacagcattttattgattattaagtgtatacatacttacattttcgtacatggtttg----tatatggacagGCTGGTACTCTTATCTGTGGTTGCCATTTGCTCCTTTGATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaataaaaattgattgaatttctttgagtaagctttttaactttatgtggacagGCTGGTACTCTTATCTATGGCTGCCATTCATCCCACTGATT
                                   ttttaac  putative branch site (score: 2)
     aaaaattgattgaatt  TA-rich tract