1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gttctgttctatgtgctattttgtgttattataatttcctgaatcatactggaagttgctcgactccttgtagttttatagcttaaaattttatgcactgtaacaaagagatgattgttcaaagacttgttcaccagGTCCTGCACTTGTCTTTGAAGGTGAGGAAGCTATGATTGCAGCTATAGCAGAGAATCCTATGAGCTTTAAG
species | Vitis vinifera |
transcript | Vv05s0051g00830.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AGAGGGTTCTGTTGCAAAAATTACTGGAAAAGAAGGGCTATATTTCTCTG GTCCTGCACTTGTCTTTGAAGGTGAGGAAGCTATGATTGCAGCTATEST: gi|18459377|gb|BM437655.1|BM437655
genomic: AGAGGGTTCTGTTGCAAAAATTACTGGAAAAGAAGGGCTATATTTCTCTGgttctgttct ... tgttcaccagGTCCTGCACTTGTCTTTGAAGGTGAGGAAGCTATGATTGCAGCTAT
EST: AGAGGGTTCTGTTGCAAAAATTACTGGAAAAGAAGGGCTATATTTCTCTG GTCCTGCACTTGTCTTTGAAGGTGAGGAAGCTAEST: gi|37189217|gb|CF608566.1|CF608566
genomic: AGAGGGTTCTGTTGCAAAAATTACTGGAAAAGAAGGGCTATATTTCTCTGgttctgttct ... tgttcaccagGTCCTGCACTTGTCTTTGAAGGTGAGGAAGCTA
EST: AGAGGGTTCTGTTGCAAAAATTACTGGAAAAGAAGGGCTATATTTCTCTG GTCCTGCACTTGTCTTTGAAGGTGAGGAAGCTATGATTGCAGCTATAGCAGEST: gi|30320752|gb|CD004014.1|CD004014
genomic: AGAGGGTTCTGTTGCAAAAATTACTGGAAAAGAAGGGCTATATTTCTCTGgttctgttct ... tgttcaccagGTCCTGCACTTGTCTTTGAAGGTGAGGAAGCTATGATTGCAGCTATAGCAG
EST: AGAGGGTTCTGTTGCAAAAATTACTGGAAAAGAAGGGCTATATTTCTCTG GTCCTGCACTTGTCTTTGAAGGTGAGGAAGCTATGATTGCAGCTATAGCAGEST: gi|110732410|gb|EE107670.1|EE107670
genomic: AGAGGGTTCTGTTGCAAAAATTACTGGAAAAGAAGGGCTATATTTCTCTGgttctgttct ... tgttcaccagGTCCTGCACTTGTCTTTGAAGGTGAGGAAGCTATGATTGCAGCTATAGCAG
EST: AGAGGGTTCTGTTGCAAAAATTACTGGAAAAGAAGGGCTATATTTCTCTG GTCCTGCACTTGTCTTTGAAGGTGAGGAAGCTATGATTGCAGCTATAGCAG
genomic: AGAGGGTTCTGTTGCAAAAATTACTGGAAAAGAAGGGCTATATTTCTCTGgttctgttct ... tgttcaccagGTCCTGCACTTGTCTTTGAAGGTGAGGAAGCTATGATTGCAGCTATAGCAG
ttaaaattttatgcactgtaacaaagagatgattgttcaaagacttgttcaccagGTCCTGCACTTGTCTTTGAAGGTGAGGAAGCTATGATTGCAGCTATAGCAGAGAATCCTATGAGCTTTAAG
ctgtaac putative branch site (score: 3)
cttgttc putative PPT
attttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttctgttctatgtgctattttgtgttattataatttcctgaatcatactggaagttgctcgactccttgtagttttatagcttaaaattttatgcactgtaacaaagagatgattgttcaaagacttgttcaccagGTCCTGCACTTGTCTTTGAAGGTGAGGAAGCTATGATTGCAGCTATAGCAGAGAATCCTATGAGCTTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT