1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gcaacccgtatattataaagaacatgttgaagagagtcagatagagatcccattacatgaaatatgctgcctctctcaacctttctatcattgactgcagGCTCTTCAAGTATCAAAGTGAAGGATGAACGTTCTGGATCTGTATTCCGTGTAGGTGCCCATGATCTTTCTTCCAGTTACAGTCTGACTAGTGGAAGCAT
species | Vitis vinifera |
transcript | Vv04s0023g00730.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGTTGTATATGATCTTGAAAAGCAAGGAATTGGATGGGTTGAATATAACT GCTCTTCAAGTATCAAAGTGAAGGATGAACGTTCTGGATCTGTATTCCGTGEST: gi|110389046|gb|EC953857.1|EC953857
genomic: TGTTGTATATGATCTTGAAAAGCAAGGAATTGGATGGGTTGAATATAACTgtaagtattt ... ttgactgcagGCTCTTCAAGTATCAAAGTGAAGGATGAACGTTCTGGATCTGTATTCCGTG
EST: TGTTGTATATGATCTTGAAAAGCAAGGAATTGGATGGGTTGAATATAACT GCTCTTCAAGTATCAAAGTGAAGGATGAACGTTCTGGATCTGTATTCCGTG
genomic: TGTTGTATATGATCTTGAAAAGCAAGGAATTGGATGGGTTGAATATAACTgtaagtattt ... ttgactgcagGCTCTTCAAGTATCAAAGTGAAGGATGAACGTTCTGGATCTGTATTCCGTG
gatcccattacatgaaatatgctgcctctctcaacctttctatcattgactgcagGCTCTTCAAGTATCAAAGTGAAGGATGAACGTTCTGGATCTGTATTCCGTGTAGGTGCCCATGATCTTTCTTCCAGTTACAGTCTGACTAGTGGAAGCAT
cattgac putative branch site (score: 3)
attacatgaaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaacccgtatattataaagaacatgttgaagagagtcagatagagatcccattacatgaaatatgctgcctctctcaacctttctatcattgactgcagGCTCTTCAAGTATCAAAGTGAAGGATGAACGTTCTGGATCTGTATTCCGTGTAGGTGCCCATGATCTTTCTTCCAGTTACAGTCTGACTAGTGGAAGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
gcaaccc
- - - - - - - -taaagaa
- - - - - - - - - - - catgttg
- - - - - - - - - - - - - - -aagagag
- - - - - - - - - - - - - - - - - - - - atagaga
- - - - - - - - - - - - - - - - - - - - - - - - -ccattac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgctg