Sequence
atgc intronic sequence ATGC exonic sequence...atgatagtcaagattttgatgagcgagtcaatcattttgcaagtcacccctataaggatatatgataatagatctgcaatgtatgttgttactcttgcagGCTGAAAGTGCAATTGCTGCTCTCAACTGCAGCGGTGTTGTGCTTGGTTCCTTGCCGATAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g02740.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: LOC_Os08g02330.1 (Oryza sativa), 3'ss of exon 8
atgatagtcaagattttgatgagcgagtcaatcattttgcaagtcacccctataaggatatatgataatagatctgcaatgtatgttg---ttactcttg--------cagGCTGAAAGTGCAATTGCTGCTCTCAACTGCAGCGGTGTTGTGCTTGGTTCCTTGCCGATAAG
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----------aaacttgtattcctttatccaaaatcttacatggtgctagtttctgtgtatac-ataactgatctctatcttacgtttaacttctttttgtcaacattcagGCTGAAAGTGCCACTGCTGCTCTCAACTGCAGTGGTGTCATACTGGGTTCCTTGCCAATAAG
upper sequence: Vv02s0025g02740.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GRMZM2G069102_T01 (Zea mays), 3'ss of exon 8
atgatagtcaagattttgatgag--cgagtcaatcattttgcaagtcacccctataaggatatatgataatagatctgcaa-tgtatgttg---ttactcttgcagGCTGAAAGTGCAATTGCTGCTCTCAACTGCAGCGGTGTTGTGCTTGGTTCCTTGCCGATAAG
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-----atttggttggtcggtgcctccaagttgtttggtctgccgttcaaatgcatgattat-tctgcgagctgttttaagactgggcctcaaatttttttttccagGCAGAAAGTGCTACTGCTGCTCTCAACTGTAGCGGTGTGGTACTGGGATCCTTGCCAATAAG
upper sequence: Vv02s0025g02740.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT1G32790.1 (Arabidopsis thaliana), 3'ss of exon 8
atgatagtcaagattttgatgagcgagtcaatcattttgcaagtcacccctataaggatatatgataatagatctgcaatgtatgttgttactcttgcagGCTGAAAGTGCAATTGCTGCTCTCAACTGCAGCGGTGTTGTGCTTGGTTCCTTGCCGATAAG
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--------------------gtaataatcgaacacacctccacacatttctttgagt-catattctga-------gtagtctttctttatatcttcacagGCGGAAAGCGCAATAGCTGCTCTCAACTGCAGTGGAGTTGTTCTTGGTTCTTTACCTATAAG
upper sequence: Vv02s0025g02740.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT1G32790.2 (Arabidopsis thaliana), 3'ss of exon 8
atgatagtcaagattttgatgagcgagtcaatcattttgcaagtcacccctataaggatatatgataatagatctgcaatgtatgttgttactcttgcagGCTGAAAGTGCAATTGCTGCTCTCAACTGCAGCGGTGTTGTGCTTGGTTCCTTGCCGATAAG----
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--------------------gtaataatcgaacacacctccacacatttctttgagt-catattctga-------gtagtctttctttatatcttcacagGCGGAAAGCGCAATAGCTGCTCTCAACTGCAGTGGAGTTGTTCTTGGTTCTTTACCTATAAGGTCA
upper sequence: Vv02s0025g02740.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT4G10610.2 (Arabidopsis thaliana), 3'ss of exon 7
atgatagtcaagattttgatgagcgag---tcaatcattttgcaagtcaccc-ctataagg---atatatgataatagatctgcaatgtatgttgttactctt--gcagGCTGAAAGTGCAATTGCTGCTCTCAACTGCAGCGGTGTTGTGCTTGGTTCCTTGCCGATAAG--------------------------------------
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--gtaagcaaatacttctgttatctctctttcttccaaccttccatttgtcaactataacgcttatgcattttcattagttaagtatg-atcttttcactcttccgcagGCTGAAAGCGCGATAGCGGCTCTCAACTGCAGTGGTGTCCTTCTTGGTTCTTTACCGATAAGGTCCAAGAACAAACCAACACTTACTCTTTAACATTCTC
upper sequence: Vv02s0025g02740.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT4G10610.1 (Arabidopsis thaliana), 3'ss of exon 7
atgatagtcaagattttgatgagcg---agtcaatcattttgcaagtcaccc-ctataagg---atatatgataatagatctgcaatgtatgttgttactctt--gcagGCTGAAAGTGCAATTGCTGCTCTCAACTGCAGCGGTGTTGTGCTTGGTTCCTTGCCGATAAG
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--gtaagcaaatacttctgttatctctctttcttccaaccttccatttgtcaactataacgcttatgcattttcattagttaagtatg-atcttttcactcttccgcagGCTGAAAGCGCGATAGCGGCTCTCAACTGCAGTGGTGTCCTTCTTGGTTCTTTACCGATAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34416313|gb|CF415067.1|CF415067EST: TTGGAGACTATCATCATTCTACTCGCATCGCATTTGTTGAGTTTATAATG GCTGAAAGTGCAATTGCTGCTCTCAACTGCAGCGGTGTTGTGCTTGGTTCC
genomic: TTGGAGACTATCATCATTCTACTCGCATCGCATTTGTTGAGTTTATAATGgtaattggct ... actcttgcagGCTGAAAGTGCAATTGCTGCTCTCAACTGCAGCGGTGTTGTGCTTGGTTCC
EST:
gi|30129918|gb|CB915257.1|CB915257EST: TTGGAGACTATCATCATTCTACTCGCATCGCATTTGTTGAGTTTATAATG GCTGAAAGTGCAATTGCTGCTCTCAACTGCAGCGGTGTTGTGCTTGGTTCC
genomic: TTGGAGACTATCATCATTCTACTCGCATCGCATTTGTTGAGTTTATAATGgtaattggct ... actcttgcagGCTGAAAGTGCAATTGCTGCTCTCAACTGCAGCGGTGTTGTGCTTGGTTCC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acccctataaggatatatgataatagatctgcaatgtatgttgttactcttgcagGCTGAAAGTGCAATTGCTGCTCTCAACTGCAGCGGTGTTGTGCTTGGTTCCTTGCCGATAAG
ttactctt CT-rich tract
atatatgataatagat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atgatagtcaagattttgatgagcgagtcaatcattttgcaagtcacccctataaggatatatgataatagatctgcaatgtatgttgttactcttgcagGCTGAAAGTGCAATTGCTGCTCTCAACTGCAGCGGTGTTGTGCTTGGTTCCTTGCCGATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - -tcaatca
- - - - - - - - - - - - - - - - - ttttgca
- - - - - - - - - - - - - - - - - - - - - - - - - -ataagga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgcaat