1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gagagaccagggaaaaaatgggggaaacagagaaacattgaagtctgttgattattcttcatttctccaagatttatgacttgatcattctatcttctagCCCAAGTGGAGCACGCTCAGGGAACCCCTCAAAGATGTATTGCGGGGACTAGCTGAGCTTAAACACTCGAACCAAAGCTCCAACCCAGAGAGATCCCCTG
species | Vitis vinifera |
transcript | Vv00s0194g00020.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTTGTCCAGAAACTATCGATGAAGTTTTTGCCCTTGTCCCGTCCTTGAAG CCCAAGTGGAGCACGCTCAGGGAACCCCTCNAAGATGTATTGCGGGGACTAEST: gi|110420975|gb|EC987262.1|EC987262
genomic: CTTGTCCAGAAACTATCGATGAAGTTTTTGCCCTTGTCCCGTCCTTGAAGgtagcacatc ... tatcttctagCCCAAGTGGAGCACGCTCAGGGAACCCCTCAAAGATGTATTGCGGGGACTA
EST: CTTGTCCAGAAACTATCGATGAAGTTTTTGCCCTTGTCCCGTCCTTGAAG CCCAAGTGGAGCACGCTCAGGGAACCCCTCAAAGATGTATTGCGGGGACTAEST: gi|110730376|gb|EE107388.1|EE107388
genomic: CTTGTCCAGAAACTATCGATGAAGTTTTTGCCCTTGTCCCGTCCTTGAAGgtagcacatc ... tatcttctagCCCAAGTGGAGCACGCTCAGGGAACCCCTCAAAGATGTATTGCGGGGACTA
EST: CTTGTCCAGAAACTATCGATGAAGTTTTTGCCCTTGTCCCGTCCTTGAAG CCCAAGTGGAGCACGCTCAGGGAACCCCTCAAAGATGTATTGCGGGGACTAEST: gi|22013993|gb|BQ799027.1|BQ799027
genomic: CTTGTCCAGAAACTATCGATGAAGTTTTTGCCCTTGTCCCGTCCTTGAAGgtagcacatc ... tatcttctagCCCAAGTGGAGCACGCTCAGGGAACCCCTCAAAGATGTATTGCGGGGACTA
EST: CTTGTCCAGAAACTATTGATGAAGTTTTTGCCCTTGTCCCATCCTTGAAG CCCAAGTGGAGCACGCTCAGGGAACCCCTCAAAGATGTATTGCGGGGACTAEST: gi|161718037|gb|FC067579.1|FC067579
genomic: CTTGTCCAGAAACTATCGATGAAGTTTTTGCCCTTGTCCCGTCCTTGAAGgtagcacatc ... tatcttctagCCCAAGTGGAGCACGCTCAGGGAACCCCTCAAAGATGTATTGCGGGGACTA
EST: CTTGTCCAGAAACTATTGATGAAGTTTTTGCCCTTGTCCCGTCCTTGAAG CCCAAGTGGAGCACGCTCAGGGAACCCCTCAAAGATGTATTGCGGGGACTAEST: gi|33409317|gb|CF214944.1|CF214944
genomic: CTTGTCCAGAAACTATCGATGAAGTTTTTGCCCTTGTCCCGTCCTTGAAGgtagcacatc ... tatcttctagCCCAAGTGGAGCACGCTCAGGGAACCCCTCAAAGATGTATTGCGGGGACTA
EST: CTTGTCCAGAAACTATTGATGAAGTTTTTGCCCTTGTCCCGTCCTTGAAG CCCAAGTGGAGCACGCTCAGGGAACCCCTCAAAGATGTATTGCGGGGACTAEST: gi|30252933|gb|CB970484.1|CB970484
genomic: CTTGTCCAGAAACTATCGATGAAGTTTTTGCCCTTGTCCCGTCCTTGAAGgtagcacatc ... tatcttctagCCCAAGTGGAGCACGCTCAGGGAACCCCTCAAAGATGTATTGCGGGGACTA
EST: CTTGTCCAGAAACTATTGATGAAGTTTTTGCCCTTGTCCCGTCCTTGAAG CCCAAGTGGAGCACGCTCAGGGAGATCCCTCAAAGATGTATTGCGGGGAC
genomic: CTTGTCCAGAAACTATCGATGAAGTTTTTGCCCTTGTCCCGTCCTTGAAGgtagcacatc ... tatcttctagCCCAAGTGGAGCACGCTCAGGGA-ACCCCTCAAAGATGTATTGCGGGGAC
tgttgattattcttcatttctccaagatttatgacttgatcattctatcttctagCCCAAGTGGAGCACGCTCAGGGAACCCCTCAAAGATGTATTGCGGGGACTAGCTGAGCTTAAACACTCGAACCAAAGCTCCAACCCAGAGAGATCCCCTG
tcattctatcttct CT-rich tract
attattcttcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagagaccagggaaaaaatgggggaaacagagaaacattgaagtctgttgattattcttcatttctccaagatttatgacttgatcattctatcttctagCCCAAGTGGAGCACGCTCAGGGAACCCCTCAAAGATGTATTGCGGGGACTAGCTGAGCTTAAACACTCGAACCAAAGCTCCAACCCAGAGAGATCCCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - aaaaaat
- - - - - - - - - - - ggaaaca
- - - - - - - - - - - - - - -gagaaac
- - - - - - - - - - - - - - - - - - - tgaagtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgacttg