Sequence
atgc intronic sequence ATGC exonic sequence...gaagtcttgcttgagaattttagaacactaacttgccattttagtggtttaattatatgcataacagcataagatgaaagaatgttgatctctcttgcagGAGTGGGCTGTCTGCGGACTGTAAAAATATTTCCTTTGCAGAGATGATGACAGATGATGTGCTAATATCTAGAGAAGAAAGATGCTTTAGGCTGTGGATC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0090g01440.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA14G02090.1 (Glycine max), 3'ss of exon 9
------------------------------gaagtcttgcttgagaatttta--gaacactaacttgccattttagtggtttaattatatgcataacagcataagatgaaagaatgttgatctctct--tgcagGAGTGGGCTGTCTGCGGACTGTAAAAATATTTCCTTTGCAGAGATGATGACAGATGATGTGCTAATATCTAGAGAAGAAAGATGCTTTAGGCTGTGGATC
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gtatgaaatgaattgcatagttaattttatgcagact-atttgataatttaaataaatattcatatgc-attttaatttctgaatc---tgtttaagtgctgtagttattcaattagtgccctacacaatgcagGAGTGGTCTATCTACAGACACTAAAAAGATGTCCTATGCTGAGATGATGACTGATGATGTGCAAACATCTAGAGAAGAGAGATGCTTCCGACTGTGGATC
upper sequence: Vv19s0090g01440.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA08G41810.1 (Glycine max), 3'ss of exon 4
-gaagtcttgcttgagaattttag--aacactaacttgccattttagtggtttaattatatgcataacagcataagatgaaagaatgttgatctctct--tgcagGAGTGGGCTGTCTGCGGACTGTAAAAATATTTCCTTTGCAGAGATGATGACAGATGATGTGCTAATATCTAGAGAAGAAAGATGCTTTAGGCTGTGGATC
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tgcagact-atttgataatttaaataaatattcatatgc-atgttaattttttaatc---tgtttaagtgttgtagttattcaattagtgccctacacaatgcagGAGTGGTCTATCTACAGACACTAAAAAGATGTCCTATGCTGAGATGATGACGGATGATGTACAAACATCTAGAGAAGAGAGATGCTTCCAACTGTGGATC
upper sequence: Vv19s0090g01440.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA02G46580.1 (Glycine max), 3'ss of exon 8
---gaagtcttgcttgagaattttaga-acactaacttgccattttagtggtttaattatatgcataacagcataagatgaaagaatgttgatctctcttgcagGAGTGGGCTGTCTGCGGACTGTAAAAATATTTCCTTTGCAGAGATGATGACAGATGATGTGCTAATATCTAGAGAAGAAAGATGCTTTAGGCTGTGGATC
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aaaatactttggtttagcagcattacatatgttaatttctgaatctgtttttttccatttaagtgctgtagtt---atttaattagtgccctacacaat-gcagGAGTTGTCTATCTACAGACACTAAGAAGATGTCCTATGCTGAGATGATGACGGATGATGTGCAAACATCTAGAGAAGAGAGATGCTTCCGAATGTGGATC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggtttaattatatgcataacagcataagatgaaagaatgttgatctctcttgcagGAGTGGGCTGTCTGCGGACTGTAAAAATATTTCCTTTGCAGAGATGATGACAGATGATGTGCTAATATCTAGAGAAGAAAGATGCTTTAGGCTGTGGATC
tctctcttgc CT-rich tract
aattatatgcataa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gaagtcttgcttgagaattttagaacactaacttgccattttagtggtttaattatatgcataacagcataagatgaaagaatgttgatctctcttgcagGAGTGGGCTGTCTGCGGACTGTAAAAATATTTCCTTTGCAGAGATGATGACAGATGATGTGCTAATATCTAGAGAAGAAAGATGCTTTAGGCTGTGGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - -tgcttga
- - - - - - - - - - -agaacac
- - - - - - - - - - - - - - - -cttgcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaagaa