1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...accttggtggatctgctatgtacccatgacaaaatattctgctactcatgttaaaattattttgatctttcctaaattactgcttatttgagtcttgcagGGCGTGGACGATGGCGAGGCAGGGGGAGGGGCCGTGGACCTGGTCGGGATATCAAATCAGATGGCCCAGTCCAGGCAGCTGCCTGAACCCCATAGGTTTA
species | Vitis vinifera |
transcript | Vv18s0072g00330.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GGGCGGTTACAATGACTATGGATCAGGGGCAGTGCCTGCTCAAGGCCGTG GGCGTGGACGATGGCGAGGCAGGGGGAGGGGCCGTGGACCTGGTCGGGATAEST: gi|110410846|gb|EC976540.1|EC976540
genomic: GGGCGGTTACAATGACTATGGATCAGGGGCAGTGCCTGCTCAAGGCCGTGgtaagctctt ... agtcttgcagGGCGTGGACGATGGCGAGGCAGGGGGAGGGGCCGTGGACCTGGTCGGGATA
EST: GGATCAGGGGCAGTGCCTGCTCAAGGCCGTG GGCGTGGACGATGGCGAGGCAGGGGGAGGGGCCGTGGACCTGGTCGGGATAEST: gi|30135893|gb|CB921231.1|CB921231
genomic: GGATCAGGGGCAGTGCCTGCTCAAGGCCGTGgtaagctctt ... agtcttgcagGGCGTGGACGATGGCGAGGCAGGGGGAGGGGCCGTGGACCTGGTCGGGATA
EST: GGGCGGTTACAATGACTATGGATCAGGGGCAGTGCCTGCTCAAGGCCGTG GGCGTGGACGATGGCGAGGCAGGGGGAGGGGCCGTGGACCTGGTCGGGATAEST: gi|110419763|gb|EC986012.1|EC986012
genomic: GGGCGGTTACAATGACTATGGATCAGGGGCAGTGCCTGCTCAAGGCCGTGgtaagctctt ... agtcttgcagGGCGTGGACGATGGCGAGGCAGGGGGAGGGGCCGTGGACCTGGTCGGGATA
EST: GGGCGGTTACAATGACTATGGATCAGGGGCAGTGCCTGCTCAAGGCCGTG GGCGTGGACGATGGCGAGGCAGGGGGAGGGGCCGTGGACCTGGTCGGGATAEST: gi|110379018|gb|EC944186.1|EC944186
genomic: GGGCGGTTACAATGACTATGGATCAGGGGCAGTGCCTGCTCAAGGCCGTGgtaagctctt ... agtcttgcagGGCGTGGACGATGGCGAGGCAGGGGGAGGGGCCGTGGACCTGGTCGGGATA
EST: GGGCGGTTACAATGACTATGGATCAGGGGCAGTGCCTGCTCAAGGCCGTG GGCGTGGACGATGGCGAGGCAGGGGGAGGGGCCGTEST: gi|110374060|gb|EC938564.1|EC938564
genomic: GGGCGGTTACAATGACTATGGATCAGGGGCAGTGCCTGCTCAAGGCCGTGgtaagctctt ... agtcttgcagGGCGTGGACGATGGCGAGGCAGGGGGAGGGGCCGT
EST: GGGCGGTTACAATGACTATGGATCAGGGGCAGTGCCTGCTCAAGGCCGTG GGCGTGGACGATGGCGAGGCAGGGGGAGGGGCCGTGGACCTGGTCGGGATAEST: gi|349826958|gb|FQ419049.1|FQ419049
genomic: GGGCGGTTACAATGACTATGGATCAGGGGCAGTGCCTGCTCAAGGCCGTGgtaagctctt ... agtcttgcagGGCGTGGACGATGGCGAGGCAGGGGGAGGGGCCGTGGACCTGGTCGGGATA
EST: GGGCGGTTACAATGACTATGGATCAGGGGCAGTGCCTGCTCAAGGCCGTG GGCGTGGACGATGGCGAGGEST: gi|34415596|gb|CF414350.1|CF414350
genomic: GGGCGGTTACAATGACTATGGATCAGGGGCAGTGCCTGCTCAAGGCCGTGgtaagctctt ... agtcttgcagGGCGTGGACGATGGCGAGG
EST: GGGCGGTTACAATGACTATGGATCAGGGGCAGTGCCTGCTCAAGGCCGTG GGCGTGGACGATGGCGAGGCAGGGGGAGGGGCCGTGGACCTGGTCGGGATA
genomic: GGGCGGTTACAATGACTATGGATCAGGGGCAGTGCCTGCTCAAGGCCGTGgtaagctctt ... agtcttgcagGGCGTGGACGATGGCGAGGCAGGGGGAGGGGCCGTGGACCTGGTCGGGATA
tcatgttaaaattattttgatctttcctaaattactgcttatttgagtcttgcagGGCGTGGACGATGGCGAGGCAGGGGGAGGGGCCGTGGACCTGGTCGGGATATCAAATCAGATGGCCCAGTCCAGGCAGCTGCCTGAACCCCATAGGTTTA
tcctaaa putative branch site (score: 2)
ttaaaattattttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accttggtggatctgctatgtacccatgacaaaatattctgctactcatgttaaaattattttgatctttcctaaattactgcttatttgagtcttgcagGGCGTGGACGATGGCGAGGCAGGGGGAGGGGCCGTGGACCTGGTCGGGATATCAAATCAGATGGCCCAGTCCAGGCAGCTGCCTGAACCCCATAGGTTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - tggtgga
- - - - - - ctgctat
- - - - - - - - - - - cccatga
- - - - - - - - - - - - - - -caaaata
- - - - - - - - - - - - - - - - - - - ctgctac
- - - - - - - - - - - - - - - - - - - - - - -tcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - aaaatta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tactgct