1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cctcccctccccctcattctttttctgcgtggcctatatgattaaaaaggtcaagcaggtttgtagttctttgacatatgtttgtggtgattgattgcagGCTAGATGCGAAATACCCGATATGCAACGTGTTTAAGTTGTTCATGTGTGCAGTTTGTCAAGTAGAGATGAAACCTGGAGAGGGTATATCTATACACGCT
species | Vitis vinifera |
transcript | Vv18s0001g10700.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GATGTGGTGGAGGAGTTATTTGAGGAAGGATCTGCTATGCTTGCCGAAAG GCTAGATGCGAAATACCCGATATGCAACGTGTTTAAGTTGTTCATGTGTGCEST: gi|110362650|gb|EC926197.1|EC926197
genomic: GATGTGGTGGAGGAGTTATTTGAGGAAGGATCTGCTATGCTTGCCGAAAGgtttggacca ... ttgattgcagGCTAGATGCGAAATACCCGATATGCAACGTGTTTAAGTTGTTCATGTGTGC
EST: GATGTGGTGGAGGAGTTATTTGAGGAAGGATCTGCTATGCTTGCCGAAAG GCTAGATGCGAAATACCCGATATGCAACGTGTTTAAGTTGTTCATGTGTGCEST: gi|110370571|gb|EC930039.1|EC930039
genomic: GATGTGGTGGAGGAGTTATTTGAGGAAGGATCTGCTATGCTTGCCGAAAGgtttggacca ... ttgattgcagGCTAGATGCGAAATACCCGATATGCAACGTGTTTAAGTTGTTCATGTGTGC
EST: GATGTGGTGGAGGAGTTATTTGAGGAAGGATCTGCTATGCTTGCCGAAAG GCTAGATGCGAAATACCCGATATGCAACGTGTTTAAGTTGTTCATGTGTGC
genomic: GATGTGGTGGAGGAGTTATTTGAGGAAGGATCTGCTATGCTTGCCGAAAGgtttggacca ... ttgattgcagGCTAGATGCGAAATACCCGATATGCAACGTGTTTAAGTTGTTCATGTGTGC
aaaggtcaagcaggtttgtagttctttgacatatgtttgtggtgattgattgcagGCTAGATGCGAAATACCCGATATGCAACGTGTTTAAGTTGTTCATGTGTGCAGTTTGTCAAGTAGAGATGAAACCTGGAGAGGGTATATCTATACACGCT
gattgat putative branch site (score: 4)
atatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctcccctccccctcattctttttctgcgtggcctatatgattaaaaaggtcaagcaggtttgtagttctttgacatatgtttgtggtgattgattgcagGCTAGATGCGAAATACCCGATATGCAACGTGTTTAAGTTGTTCATGTGTGCAGTTTGTCAAGTAGAGATGAAACCTGGAGAGGGTATATCTATACACGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - ccctccc
- - - - - - ctcattc
- - - - - - - - - - - - -tgcgtgg
- - - - - - - - - - - - - - - - - - - - - -aaaaagg
- - - - - - - - - - - - - - - - - - - - - - - - - tcaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtggtg