1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ctgttacatttatgttgaggatagttttgtttaattttctttttatgtgtaatatgtttgtttttctctcttttctaacacagtttctgtttctgtccagTATGCAAGGATTGTGCGTGAGGCACTCTGTGAGTTGGAGCTTCCTTACATACTTCAAAATGTGGGAGAAGGCTCCCCAAGAACAAAGCTACTTATTGAGG
species | Vitis vinifera |
transcript | Vv18s0001g06900.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TAGACCCACCAGCCAAAAAGCTGGAACTTTTCTCATATGAAAACAATCCG TATGCAAGGATTGTGCGTGAGGCACTCTGTGAGTTGGAGCTTCCTTACATAEST: gi|110384554|gb|EC948998.1|EC948998
genomic: TAGACCCACCAGCCAAAAAGCTGGAACTTTTCTCATATGAAAACAATCTGgtaaagacta ... ttctgtccagTATGCAAGGATTGTGCGTGAGGCACTCTGTGAGTTGGAGCTTCCTTACATA
EST: TAGACCCACCAGCCAAAAAGCTGGAACTTTTCTCATATGAAAACAATCCG TATGCAAGGATTGTGCGTGAGGCACTCTGTGAGTTGGAGCTTCCTTACATAEST: gi|110396178|gb|EC961859.1|EC961859
genomic: TAGACCCACCAGCCAAAAAGCTGGAACTTTTCTCATATGAAAACAATCTGgtaaagacta ... ttctgtccagTATGCAAGGATTGTGCGTGAGGCACTCTGTGAGTTGGAGCTTCCTTACATA
EST: TAGACCCACCAGCCAAAAAGCTGGAACTTTTCTCATATGAAAACAATCCG TATGCAAGGATTGTGCGTGAGGCACTCTGTGAGTTGGAGCTTCCTTACATAEST: gi|27580578|gb|CB003273.1|CB003273
genomic: TAGACCCACCAGCCAAAAAGCTGGAACTTTTCTCATATGAAAACAATCTGgtaaagacta ... ttctgtccagTATGCAAGGATTGTGCGTGAGGCACTCTGTGAGTTGGAGCTTCCTTACATA
EST: TAGACCCACCAGCCAAAAAGCTGGAACTTTTCTCATATGAAAACAATCTG TATGCAAGGATTGTGCGTGAGGCACTCTGTGAGTTGGAGCTTCCTTACATAEST: gi|22013797|gb|BQ798831.1|BQ798831
genomic: TAGACCCACCAGCCAAAAAGCTGGAACTTTTCTCATATGAAAACAATCTGgtaaagacta ... ttctgtccagTATGCAAGGATTGTGCGTGAGGCACTCTGTGAGTTGGAGCTTCCTTACATA
EST: TAGACCCACCAGCCAAAAAGCTGGAACTTTTCTCATATGAAAACAATCCG TATGCAAGGATTGTGCGTGAGGCACTCTGTGAGTTGGAGCTTCCTTACATA
genomic: TAGACCCACCAGCCAAAAAGCTGGAACTTTTCTCATATGAAAACAATCTGgtaaagacta ... ttctgtccagTATGCAAGGATTGTGCGTGAGGCACTCTGTGAGTTGGAGCTTCCTTACATA
tgtgtaatatgtttgtttttctctcttttctaacacagtttctgtttctgtccagTATGCAAGGATTGTGCGTGAGGCACTCTGTGAGTTGGAGCTTCCTTACATACTTCAAAATGTGGGAGAAGGCTCCCCAAGAACAAAGCTACTTATTGAGG
ttctaac putative branch site (score: 1)
tttctgtttctgtcc putative PPT
aatatgtttgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgttacatttatgttgaggatagttttgtttaattttctttttatgtgtaatatgtttgtttttctctcttttctaacacagtttctgtttctgtccagTATGCAAGGATTGTGCGTGAGGCACTCTGTGAGTTGGAGCTTCCTTACATACTTCAAAATGTGGGAGAAGGCTCCCCAAGAACAAAGCTACTTATTGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
ctgttac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacacag