Sequence
atgc intronic sequence ATGC exonic sequencegttagtgttttgatgcttgagatttctctgtaattggatcattgtatacttactcatccttgagttgaatttcatgctgcagATATGGTCAGTCTTTCCCTGTTTCAGAGGAAGCTCTTGATTCCAGTTTCTCCCTTCCAATAGGGAAAGCAAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g00690.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA02G46380.2 (Glycine max), 3'ss of exon 8
----------------------------------gttagtgttttgatgcttgagatttctctgtaattggatcattgtatactt----actcatccttgagt-------------------tgaatttcatgctgcagATATGGTCAGTCTTTCCCTGTTTCAGAGGAAGCTCTTGATTCCAGTTTCTCCCTTCCAATAGGGAAAGCAAAG
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gtaagttgtgctgcttgattctcccgccccaaaaaagactcttttgctgcttgatttgtacatgaaaatgagtagtcatagattttggcatcagttcttgtttcaaaaaatatttaatttgatgaattatgtcctctagATATGGTGAGTCATTCCCTGTTTCGGCCGAAGTTCTTGATTCCAGTTTTTGCCTTCCCATAGGAAAAGCAAAG
upper sequence: Vv17s0000g00690.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA14G36540.3 (Glycine max), 3'ss of exon 8
-------------gttagtgttttgatgcttgagatttctctgtaatt---ggatcattgtatactt--actcatccttgagtt---gaatttcatgctgcagATATGGTCAGTCTTTCCCTGTTTCAGAGGAAGCTCTTGATTCCAGTTTCTCCCTTCCAATAGGGAAAGCAAAG
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gtaagttgtgctgcttggtttgttcatgaaaatgagtagtcatagattttgacatcagttcttgtttcaaaatatatttaatttcatgaattatgtcctctagATATGGTGAGTCATTCCCTGTTTCGGCCGAAGTTCTTGATTCCAGTTTTTGCCTTCCCATAGGAAAAGCAAAG
upper sequence: Vv17s0000g00690.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA14G02380.2 (Glycine max), 3'ss of exon 8
---------------------------------------------gttagtgttttgatgcttgagatttctctgtaattgg-------atcattgtatactt--actcatccttgagttga---atttcatgctgcagATATGGTCAGTCTTTCCCTGTTTCAGAGGAAGCTCTTGATTCCAGTTTCTCCCTTCCAATAGGGAAAGCAAAG
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gtaagttgtgctgcttgattctcccaccccaaaaaagacacttgtgctgcttgatttgtacatgaaaatgagtggtcatagattttgacatcagttcttgtttcaaaaaatatttaatttgatggattatgtcctctagATATGGTGAGTCATTCCCTGTTTCGGCCGAAGTTCTTGATTCCAGTTTTTGCCTTCCCATAGGAAAAGCAAAG
upper sequence: Vv17s0000g00690.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT5G50850.1 (Arabidopsis thaliana), 3'ss of exon 9
---gttagtgttttgatgcttgagatttctc-tgtaattggatc-----attgtatacttactcatccttgagttgaatttcatgctgcagATATGGTCAGTCTTTCCCTGTTTCAGAGGAAGCTCTTGATTCCAGTTTCTCCCTTCCAATAGGGAAAGCAAAG
|||| || | ||||| | | | ||| ||| || | | ||| | ||||| | |||| |||||| |||||||||||| | || |||||| ||||||| ||||| |||||||| ||||||| ||||| ||||| ||||| |||
gtaagtagtattccta-atttgagttcttgcatgtgattagagcctacggtctcatatcagtacctccttaaattga-tttcatcatgcagATATGGTGAATCATTCCCTATTTCAGAAGAAGCCCTTGATTCAAGTTTCTGTCTTCCCATAGGCAAAGCCAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctgtaattggatcattgtatacttactcatccttgagttgaatttcatgctgcagATATGGTCAGTCTTTCCCTGTTTCAGAGGAAGCTCTTGATTCCAGTTTCTCCCTTCCAATAGGGAAAGCAAAG
tacttac putative branch site (score: 1)
attgtata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttagtgttttgatgcttgagatttctctgtaattggatcattgtatacttactcatccttgagttgaatttcatgctgcagATATGGTCAGTCTTTCCCTGTTTCAGAGGAAGCTCTTGATTCCAGTTTCTCCCTTCCAATAGGGAAAGCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG