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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagaactcaaaaaacatcttatttaagaatagtttgcagcaatgaggaaaatgcaattcatatgtatatatattttttttgactaaattttgcagTTATCACTCCTCACCATATTCTACAATATCCTGTGTGAGCAGAAGTCATGTCCATGCAAGGATTATGAAAATATTGTTTGTTTCCTGACAAATTTGGTTA

Basic information

species Vitis vinifera
transcript Vv16s0050g02160.t01
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37187299|gb|CF606652.1|CF606652
EST:     TTTTGCGGAAGATCTGTGATGATTTGGAGCTCTCTCCAATGCTATACCAG                         TTATCACTCCTCACCATATTCTACAATATCCTGTGTGAGCAGAAGTCATGT
genomic: TTTTGCGGAAGATCTGTGATGATTTGGAGCTCTCTCCAATGCTATACCAGgttagaactc ... aattttgcagTTATCACTCCTCACCATATTCTACAATATCCTGTGTGAGCAGAAGTCATGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgaggaaaatgcaattcatatgtatatatattttttttgactaaattttgcagTTATCACTCCTCACCATATTCTACAATATCCTGTGTGAGCAGAAGTCATGTCCATGCAAGGATTATGAAAATATTGTTTGTTTCCTGACAAATTTGGTTA
                                        gactaaa  putative branch site (score: 2)
 aattcatatgtatata  TA-rich tract