1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...acgaagtgcaactcctaatgaaagtttatttgctcttttattttaaattcagttatgacactcgactctgacataagttttacttttttactttttctagAATTTGTTGGTGACATCGACTTTGGCCATCTGCACCGACCCATATCCAACAACACTGGTGCAAAAACCAGATGAACCACCAGAGAAAGGAAGCGAAGAAC
species | Vitis vinifera |
transcript | Vv16s0039g02270.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CACAAAGCATTTATCCGTATCTTTCAAAGCTTGCTCTAGCACTAGAAAAG AATTTGTTGGTGACATCGACTTTGGCCATCTGCACCGACCCATATCCACCAEST: gi|110719175|gb|EE096848.1|EE096848
genomic: CACAAAGCATTTATCCGTATCTTTCAAAGCTTGCTCTAGCACTAGAAAAGgtatgccggc ... ctttttctagAATTTGTTGGTGACATCGACTTTGGCCATCTGCACCGACCCATATCCAACA
EST: CACAAAGCATTTATCCGTATCTTTCAAAGCTTGCTCTAGCACTAGAAAAG AATTTGTTGGTGACATCGACTTTGGCCATCTGCACCGACCCATATCCAACAEST: gi|27584835|gb|CB007530.1|CB007530
genomic: CACAAAGCATTTATCCGTATCTTTCAAAGCTTGCTCTAGCACTAGAAAAGgtatgccggc ... ctttttctagAATTTGTTGGTGACATCGACTTTGGCCATCTGCACCGACCCATATCCAACA
EST: CACAAAGCATTTATCCGTATCTTTCAAAGCTTGCTCTAGCACTAGAAAAG AATTTGTTGGTGACATCGACTTTGGCCATCTGCACCGACCCATATCCAACAEST: gi|30125898|gb|CB911237.1|CB911237
genomic: CACAAAGCATTTATCCGTATCTTTCAAAGCTTGCTCTAGCACTAGAAAAGgtatgccggc ... ctttttctagAATTTGTTGGTGACATCGACTTTGGCCATCTGCACCGACCCATATCCAACA
EST: CACAAAGCATTTATCCGTATCTTTCAAAGCTTGCTCTAGCACTAGAAAAG AATTTGTTGGTGACATCGACTTTGGCCATCTGCACCGACCCATATCCAACAEST: gi|110686390|gb|EE063974.1|EE063974
genomic: CACAAAGCATTTATCCGTATCTTTCAAAGCTTGCTCTAGCACTAGAAAAGgtatgccggc ... ctttttctagAATTTGTTGGTGACATCGACTTTGGCCATCTGCACCGACCCATATCCAACA
EST: CACAAAGCATTTATCCGTATCTTTCAAAGCTTGCTCTAGCACTAGAAAAG AATTTGTTGGGGACATCGACTTTGGCCATCTGCACCGACCCATATCCAACAEST: gi|110698756|gb|EE076614.1|EE076614
genomic: CACAAAGCATTTATCCGTATCTTTCAAAGCTTGCTCTAGCACTAGAAAAGgtatgccggc ... ctttttctagAATTTGTTGGTGACATCGACTTTGGCCATCTGCACCGACCCATATCCAACA
EST: CACAAAGCATTTATCCGTATCTTTCAAAGCTTGCTCTAGCACTAGAAAAG AATTTGTTGGTGACATCGACTTTGGCCATCTGCACCGACCCATATCCAACA
genomic: CACAAAGCATTTATCCGTATCTTTCAAAGCTTGCTCTAGCACTAGAAAAGgtatgccggc ... ctttttctagAATTTGTTGGTGACATCGACTTTGGCCATCTGCACCGACCCATATCCAACA
aattcagttatgacactcgactctgacataagttttacttttttactttttctagAATTTGTTGGTGACATCGACTTTGGCCATCTGCACCGACCCATATCCAACAACACTGGTGCAAAAACCAGATGAACCACCAGAGAAAGGAAGCGAAGAAC
ctctgac putative branch site (score: 3)
ttttacttttttactt putative PPT
ataagttttacttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acgaagtgcaactcctaatgaaagtttatttgctcttttattttaaattcagttatgacactcgactctgacataagttttacttttttactttttctagAATTTGTTGGTGACATCGACTTTGGCCATCTGCACCGACCCATATCCAACAACACTGGTGCAAAAACCAGATGAACCACCAGAGAAAGGAAGCGAAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - caactcc
- - - - - - - - aatgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgacat