Sequence
atgc intronic sequence ATGC exonic sequencegtatgcagttaatatttattttcttatatgttttttggtcatcactttgttttctaatctcttcaacatgtgatggcttatagTAACTGGAGCAGTTCTTGCACGCTCATCTCAGCCCCTAGTTGGTCTCATGATGAATATGAGGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0074g00300.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA10G34510.1 (Glycine max), 3'ss of exon 2
-----------------------------------------------gtatgcagttaatatttattttcttatatgt-tttttggtcatcactttgttttc-taatctcttcaacatgtgatg-----gcttatagTAACTGGAGCAGTTCTTGCACGCTCATCTCAGCCCCTAGTTGGTCTCATGATGAATATGAGGAG
| || | || |||| |||||| | | ||| | || ||| | | | ||| | | || || | |||||| |||||||||||| ||||||| || ||||| ||| |||| ||||| |||||||| ||||||||
gtatgtgcagaatctaggtttcatttctttaaatagttggcacaattctgtgtttcttatttttactttctttcttttgcattttattattgttttatgtggatggtcttctaactatatggaactgatgactatagTGACTGGAGCAGTTGTTGCACGATCTTCTCAACCCTTAGTAGGTCTTATGATGAACATGAGGAG
upper sequence: Vv13s0074g00300.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA20G33040.1 (Glycine max), 3'ss of exon 2
-----------------------------------------------gtatgcagttaatatttattttcttatatgttttttggtcatcactttgttttc-----taatctcttcaacatgtgatg-----gcttatagTAACTGGAGCAGTTCTTGCACGCTCATCTCAGCCCCTAGTTGGTCTCATGATGAATATGAGGAG
|||| | || |||| |||||| | || ||| | || ||| || || | || | | || ||| | |||||| |||||||||||| ||||||| || ||||| ||| |||| ||||| |||||||| ||||||||
gtatgtgcagaatctaggtttcatttctttaaatagctggcacaattctatgtttcttatttttactttctttcctcttctttcttttgcattttattatcgacgatggccttctaactatatgaaactgatgactatagTGACTGGAGCAGTTGTTGCACGATCTTCTCAACCCTTAGTAGGTCTTATGATGAACATGAGGAG
upper sequence: Vv13s0074g00300.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT3G10550.1 (Arabidopsis thaliana), 3'ss of exon 8
----gtatgcagttaatatttattttc--ttatatgttttttggtcatcact---ttgttttctaatc----------tcttcaacatgtgatggcttatagTAACTGGAGCAGTTCTTGCACGCTCATCTCAGCCCCTAGTTGGTCTCATGATGAATATGAGGAG
| | |||| || | | | ||| || | |||| | | | ||| || | || | || | | | | || || || |||||| || ||||||||||||| || || |||| ||||| |||||||||||||||||
gtaggaaggcagatattttggacttttggttgcttccattttaattgtggttgtattgcttccaaaatgatatactgattttgatcttaacctcaattgcagGAAGTGGAGCTGTGATTGCACGCTCATCACAACCTTTAGTGGGTCTTATGATGAATATGAGGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgttttttggtcatcactttgttttctaatctcttcaacatgtgatggcttatagTAACTGGAGCAGTTCTTGCACGCTCATCTCAGCCCCTAGTTGGTCTCATGATGAATATGAGGAG
ttctaat putative branch site (score: 2)
ttttctaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgcagttaatatttattttcttatatgttttttggtcatcactttgttttctaatctcttcaacatgtgatggcttatagTAACTGGAGCAGTTCTTGCACGCTCATCTCAGCCCCTAGTTGGTCTCATGATGAATATGAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG