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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcaacctcctcttgttgttctctttggatatcatctttgtgtgttaagttaatgttggtttgattgatcatattgtcgagatcttcattactctctggcatacagGATTTGGTTCTAATGAAGCAAAACAATATCAATGCTGTGAGAAACAGCCATTATCCCCAACATCCTCGATGGTACGAGTTGTGTGATTTGTTTGGCATGT

Basic information

species Vitis vinifera
transcript Vv13s0067g03000.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g03000.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os01g72340.1 (Oryza sativa), 3'ss of exon 9
gtgcaacctcctcttgt----tgttctctttggatat------catctttgtgtgttaagttaatgttggtttgattgatcatattgtcgagatcttcattactctctggcat---acagGATTTGGTTCTAATGAAGCAAAACAATATCAATGCTGTGAGAAACAGCCATTATCCCCAACATCCTCGATGGTACGAGTTGTGTGATTTGTTTGGCATGT
  | | |   ||  |||    |||  | | || | |        ||   | | | ||  | |  | ||  |||     |   | || || || | || | || |   |    |   ||||||| ||||| | ||||  |||||||| || |||||||| ||||||||||||||||||||||||||  | ||||| ||| |||||||  | |||||  | |
--gtagctctcttctgtcaactgtcatatctgaagacatttcgtattactatctctttggctcgtttttttttctcccaggctgttttc-aggtattaactatttatttatttgtgacagGATCTGGTTTTGATGAGACAAAACAACATTAATGCTGTTAGAAACAGCCATTATCCCCAACATCCAAGGTGGTATGAGCTGTGTGACATTTTTGGACTTT

upper sequence: Vv13s0067g03000.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G032496_T01 (Zea mays), 3'ss of exon 1
gtgcaacctcctcttgttgttctctttggatatcatctttgtgtgttaagttaatg------ttggtttgatt-gatcatatt-----gtcgagatcttcattac---tctctggcatacagGATTTGGTTCTAATGAAGCAAAACAATATCAATGCTGTGAGAAACAGCCATTATCCCCAACATCCTCGATGGTACGAGTTGTGTGATTTGTTTGGCATGT
|| |||  || || |||  |     ||||| | ||| ||    | ||||  ||||       ||||| |||||  |||||||      ||  ||||  | |  |    ||| |     ||||||  || || | |||| ||||||||||||||||||||| ||||| |||||||| || || || ||  | ||||| ||||| |||||  | |||||  | |
gt-caagatcttcctgtcata----ttggagaacattttaagtttttaacataataatctctttggtctgatttaatcatatgcccaggttcagattcttacaatatatctatttgtgacagGACCTGATTTTGATGAGGCAAAACAATATCAATGCTGTTAGAAATAGCCATTACCCACAGCACCCAAGGTGGTATGAGTTATGTGACATTTTTGGTCTTT

upper sequence: Vv13s0067g03000.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA13G26700.1 (Glycine max), 3'ss of exon 8
gtgcaacctcctcttgttgttctctttggatatcatctttgtgtgttaagttaatgttggtttgat--tgatcatattgtcgagatcttcattactctctggcatacagGATTTGGTTCTAATGAAGCAAAACAATATCAATGCTGTGAGAAACAGCCATTATCCCCAACATCCTCGATGGTACGAGTTGTGTGATTTGTTTGGCATGT
|| |  | |  |||| || ||| | ||  |||  |  ||     |||| ||| ||| |||    ||  |  |  | || |  |||   | || | |     || |||||||||||||  ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| || ||||| ||| | |||||||||||||||||||
gtactgc-taatcttttt-ttccccttcaataaaaaatt-----gtta-gtttatgatggccaaatgctatttgtttttttaagacactaataattgctgtgcttacagGATTTGGTCTTAATGAAGCAAAACAATATTAATGCTGTGAGGAACAGCCATTATCCCCAACATCCACGTTGGTATGAGCTATGTGATTTGTTTGGCATGT

upper sequence: Vv13s0067g03000.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT3G54440.3 (Arabidopsis thaliana), 3'ss of exon 8
-------gtgcaacctcctcttgttgttctctttggatatcatctttgtgtg------ttaagttaatgttggtttgattgatcatattgtcgagatcttcattactctctggcata------cagGATTTGGTTCTAATGAAGCAAAACAATATCAATGCTGTGAGAAACAGCCATTATCCCCAACATCCTCGATGGTACGAGTTGTGTGATTTGTTTGGCATGT
       ||      |  |  | |||| |   |    | ||  | ||   ||      ||| |  |    |  ||   |||   |   | | | ||| || |||   | || | |        ||||||||  || | |||||  || | ||||||||||| ||| ||||||| |||||||| |||||||| || ||||| || || ||||||||||| |||||||
gtaacatgttttttttttttctcttgtccagctctactttctcccttccatggtttacttaggacaccactatttaacttgtgtactctattgggattttgatttaccccttgtactgttcctcagGATTTAATTATGATGAAAGAATATAATATCAATGCGGTGCGAAACAGTCATTATCCTCAACATCCCCGCTGGTATGAATTATGTGATTTGTTCGGCATGT

upper sequence: Vv13s0067g03000.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: PP1S130_43V6.1 (Physcomitrella patens), 3'ss of exon 9
gtgcaacctcctcttgttgttctctttggatatcatctttgtgtgttaagttaatgttggtttgattgatcatattgtcgagatcttcattactctctggcatacagGATTTGGTTCTAATGAAGCAAAACAATATCAATGCTGTGAGAAACAGCCATTATCCCCAACATCCTCGATGGTACGAGTTGTGTGATTTGTTTGGCATGT
||     | |     | |   |  | || | |   |  ||   | | |  |  || |   |  ||||  ||    |   || |   ||  |   || |    | |||||| |     ||||||||||  ||||||| ||||| ||| |||||||||||||||||   ||  |||| |||||||||||||||||| | || ||  | |
gtctgtaccctcaaagctagaccgtgtg-acactgtactt---tttcatatctatctcaata-gatttttccggct-ctgatacaatctatgaactttactgtgcagGATATCACGTTAATGAAGCAGCACAATATAAATGCAGTGCGAAACAGCCATTATCCCATGCACTCTCGCTGGTACGAGTTGTGTGATCTCTTCGGGCTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgttggtttgattgatcatattgtcgagatcttcattactctctggcatacagGATTTGGTTCTAATGAAGCAAAACAATATCAATGCTGTGAGAAACAGCCATTATCCCCAACATCCTCGATGGTACGAGTTGTGTGATTTGTTTGGCATGT
           gattgat  putative branch site (score: 4)
                               tcttcattactctct  putative PPT
                atcatatt  TA-rich tract