Sequence
atgc intronic sequence ATGC exonic sequence...gactactgtgattcagtgctgtgaaattgtgaatctgtgatctagccaaatattagacgtgcctgacatacttgcatatgcttgtgcttaattattctagGTGAACAAAGGAGTGGAGGCATCCCTAGTTCAACTCCTTGATACAGGCTTATTGCATGCTGATCCGCATCCTGGAAATTTGCGTTACATGCCTTCAGGGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g04130.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os02g56200.1 (Oryza sativa), 3'ss of exon 9
gactactgtgattcagtgctgtgaaattgtgaatctgtgatctagccaaatattagacgtgcctgacatacttgcatatgcttgtgcttaattattct-------agGTGAACAAAGGAGTGGAGGCATCCCTAGTTCAACTCCTTGATACAGGCTTATTGCATGCTGATCCGCATCCTGGAAATTTGCGTTACATGCCTTCAGGGC
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------agaaatataa-acattataacaacaattactacatttcaataaacatttttcccctctggacaaaatgttttaacatcttgttaattactatgatgataagGTCAACAAAGGTGTCGAAGCATCATTAGTGCAGCTCCTCGAGACTGGTTTGTTGCATGCTGATCCTCATCCTGGGAATTTGCGTTATACACCTGAAGGTC
upper sequence: Vv13s0019g04130.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM5G855200_T02 (Zea mays), 3'ss of exon 1
gactactgtgattcagtgctgtgaaattgtgaatctgtgatctagccaaatattagacgtgcctgacatacttgcatatgcttgtgcttaattattct--agGTGAACAAAGGAGTGGAGGCATCCCTAGTTCAACTCCTTGATACAGGCTTATTGCATGCTGATCCGCATCCTGGAAATTTGCGTTACATGCCTTCAGGGC
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-atgatgatgtagcataaactcacaatgactagtacatttcccaagctcaatttaaacttgctatcca-atatgttttaacattttcttaattactcataagGTCAATAAAGGTGTAGAGGCATCGCTAGTGCAGCTTCTTGAGACAGGCTTGTTGCATGCTGATCCTCATCCTGGTAACTTGCGTTATACTCCTGAAGGCC
upper sequence: Vv13s0019g04130.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA10G35610.1 (Glycine max), 3'ss of exon 8
---gactactgtgattcagtgctgtgaaattgtgaatctgtgatctagccaaatattagacgtgcctgacatacttgcatatgcttgtgc-ttaattattctagGTGAACAAAGGAGTGGAGGCATCCCTAGTTCAACTCCTTGATACAGGCTTATTGCATGCTGATCCGCATCCTGGAAATTTGCGTTACATGCCTTCAGGGC
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aaaatcttgctttgtttgatgtc-tgagactctgagtgtttcactatattgaaa--tagtcacattcaat-taatttttcacttttacatattgattaactcagGTCAGCAAAGGCATTGAATCAACATTGGTGCAACTTCTTGAAACAGGCTTATTACATGCTGATCCACATCCTGGTAACTTGCGTTACACTTCCTCAGGAC
upper sequence: Vv13s0019g04130.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA20G31940.1 (Glycine max), 3'ss of exon 8
---gactactgtgattcagtgctgtgaaattgtgaatctgtgatctagccaaatattagacgtgcctgacatacttgcatatgcttgtgc-ttaattattctagGTGAACAAAGGAGTGGAGGCATCCCTAGTTCAACTCCTTGATACAGGCTTATTGCATGCTGATCCGCATCCTGGAAATTTGCGTTACATGCCTTCAGGGC
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aaagcttgctttg-ttcgatgtc-tgagactg--agtgtttcactatgttgaaattgtcacattcaattaatttttcatttcttttacatattgattaactcagGTCAGCAAAGGCGTTGAATCAACATTGGTCCAGCTTCTTGAAACAGGCTTATTACATGCTGATCCACATCCTGGTAACTTGCGTTACACTTCCTCAGGAC
upper sequence: Vv13s0019g04130.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT2G39190.2 (Arabidopsis thaliana), 3'ss of exon 8
gactactgtgattcagtgctgtgaaattgtgaatctgtgatctagccaaatattagacgtgcctgacatact--tgcatatgcttgtgcttaatt---attctagGTGAACAAAGGAGTGGAGGCATCCCTAGTTCAACTCCTTGATACAGGCTTATTGCATGCTGATCCGCATCCTGGAAATTTGCGTTACATGCCTTCAGGGC
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-tttaacgtaatttgttataatcca--tgttaatttggtag-taccattttgctaga-atattttatattctaatgacttagctttcttttaatttccactgtagGTGAACAAAGGGGTAGAGGCAACTCTAGTTCAACTCCTTGATACAGGTATTTTGCATGCAGATCCGCATCCTGGAAACCTTCGTTACACAACATCAAGAC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ccaaatattagacgtgcctgacatacttgcatatgcttgtgcttaattattctagGTGAACAAAGGAGTGGAGGCATCCCTAGTTCAACTCCTTGATACAGGCTTATTGCATGCTGATCCGCATCCTGGAAATTTGCGTTACATGCCTTCAGGGC
ttattct CT-rich tract
ttaattattcta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gactactgtgattcagtgctgtgaaattgtgaatctgtgatctagccaaatattagacgtgcctgacatacttgcatatgcttgtgcttaattattctagGTGAACAAAGGAGTGGAGGCATCCCTAGTTCAACTCCTTGATACAGGCTTATTGCATGCTGATCCGCATCCTGGAAATTTGCGTTACATGCCTTCAGGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- ctactgt
- - - - - - - -gtgctgt
- - - - - - - - - - - - - - - - - - - - - -agccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctgaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catatgc