Sequence
atgc intronic sequence ATGC exonic sequencegttatcatcgtttatattttgctatgagaagtaggctgattcttttttgtcactaacaacactgttgatttgagtggggatgtgttgtttatgcagAGGGAGTCCACCTTATGGAGGTTGAAGTTTTTTGTGAAGGATGCGTTGGAAATCCAGGGAAAGAGTTCAGCAAGCATGGGGGGAAATAACACGGCCACCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g03950.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA17G23240.1 (Glycine max), 3'ss of exon 9
----------------------------------------------------------------------------------gttatcatcgtttatattttgctatga-gaagta-ggctgattcttttttgtcac--taacaacactgttgatttgagtggggatgtgttgtttatgcagAGGGAGTCCACCTTATGGAGGTTGAAGTTTTTTGTGAAGGATGCGTTGGAAATCCAGGGAAAGAGTTCAGCAAGCATGGGGGGAAATAACACGGCCACCA
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gtcattacaagtacacttcaaagtgtcatgacattcactttttttattcaaatgtaaataaaaagaaagaaaaaaaaacagaaataagatcgtttttatttctttagattgaattacagctggttgtcacaaattgatgtagtgagtatgctaatgtgtatat---catgttccttaagcagAGCGAGTCTACCTTGTGGAGGTTAAAGTTTTTTGTTAAGGAGGCTTTAGAAGTGCAGGGCAAGAACTCAGGAAGCATGGGTGGCAATGAAAACCAGAACA
upper sequence: Vv13s0019g03950.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT3G52280.2 (Arabidopsis thaliana), 3'ss of exon 8
gttatcatcgtttatattttgctatgagaagtaggctgattcttttttgtcactaaca-acactgttgatttgagtggggatgtgttgttt--atgcagAGGGAGTCCACCTTATGGAGGTTGAAGTTTTTTGTGAAGGATGCGTTGGA-AATCCAGGGAAAGAGTTCAGCAAGCATGGGGGGAAATAACACGGCCACCA-
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gtaa--atctcttacttacta-tacgccaccttcattgatggctttctggtccaaagacatgtcttttcttcttcttagctagttttgcttgtatgcagGACGAACCAACACTATGGAGGCTAAAGTTCTTTGTGAAGGATGCGTTGGATAATGCAATGAAGAAGA--AGAAAGAAGAGGAGACAAAGACTAGAGAATTGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttttttgtcactaacaacactgttgatttgagtggggatgtgttgtttatgcagAGGGAGTCCACCTTATGGAGGTTGAAGTTTTTTGTGAAGGATGCGTTGGAAATCCAGGGAAAGAGTTCAGCAAGCATGGGGGGAAATAACACGGCCACCA
ttgtttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttatcatcgtttatattttgctatgagaagtaggctgattcttttttgtcactaacaacactgttgatttgagtggggatgtgttgtttatgcagAGGGAGTCCACCTTATGGAGGTTGAAGTTTTTTGTGAAGGATGCGTTGGAAATCCAGGGAAAGAGTTCAGCAAGCATGGGGGGAAATAACACGGCCACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG