Sequence
atgc intronic sequence ATGC exonic sequencegtgatgactatctcaatcttctggagttcactccatggatgaatttttattttttttgcagagtgttaattgtatattgtaaaatgtccagGGTCTTGGTATCTTGAAACAAAAATTCCCAAATACTCCAGTTTTAGCTTTAACTGCTACTGCAACAGCCAGTGTAAAAGAAGATGTAGTGCAAGCCCTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0035g00400.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA08G20070.1 (Glycine max), 3'ss of exon 14
gtgatgactatctcaatcttctggagttcactccatggatgaatttttattttttttgcagagtgttaattgtatattgtaaaatgtccagGGTCTTGGTATCTTGAAACAAAAATTCCCAAATACTCCAGTTTTAGCTTTAACTGCTACTGCAACAGCCAGTGTAAAAGAAGATGTAGTGCAAGCCCTTG
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gttggagctttggtacccttc--aaattcatgcaaatcacatgataatatattgctta---aattttaattgccactgttaattttcccagGGACTTGGTATATTGAAGCAGAAATTCCCAAATACTCCTGTTTTAGCTTTAACAGCTACAGCAACAGCTAGTGTAAAAGAAGATGTAGTGCAAGCACTTG
upper sequence: Vv12s0035g00400.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT1G10930.1 (Arabidopsis thaliana), 3'ss of exon 12
gtgatgactatctcaatcttc-tggagttcactccatggat-----gaatttttatt-ttttttgcagagtgttaattgtatattgtaaaatgtccagGGTCTTGGTATCTTGAAACAAAAATTCCCAAATACTCCAGTTTTAGCTTTAACTGCTACTGCAACAGCCAGTGTAAAAGAAGATGTAGTGCAAGCCCTTG
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gtta-ggccatcaaaagcttcatacaacataccctcttactttcgagaaacataattgtccttttttacgtaccaaattt---ttgtggaatacacagAGTCTTGGTATTCTGAAGCAGAAATTTCCCAACATTCCCGTGTTAGCTTTAACAGCTACAGCAACAGCCAGTGTGAAAGAAGATGTGGTACAAGCCCTTG
upper sequence: Vv12s0035g00400.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT1G60930.1 (Arabidopsis thaliana), 3'ss of exon 12
-----------gtgatgactatctcaatcttctggagttcactcca----tggatgaatttttattttttttgcagagtgttaattgtatattgtaaaatgtccagGGTCTTGGTATCTTGAAACAAAAATTCCCAAATACTCCAGTTTTAGCTTTAACTGCTACTGCAACAGCCAGTGTAAAAGAAGATGTAGTGCAAGCCCTTG
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gtgaagcgtctgtaaagcttaaaacagacattgcttatacacttctgtttttaagaaacacaagctcccttttttatctcttaaaacaatgctgcaatatg--cagGGTCTTGGTGTTCTGAAGCAGAAGTTTCCAAACATTCCCATGTTAGCTTTGACAGCTACTGCAACAACCAGCGTGAAAGAAGATGTTGTACAAGCTCTCG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggatgaatttttattttttttgcagagtgttaattgtatattgtaaaatgtccagGGTCTTGGTATCTTGAAACAAAAATTCCCAAATACTCCAGTTTTAGCTTTAACTGCTACTGCAACAGCCAGTGTAAAAGAAGATGTAGTGCAAGCCCTTG
tgttaat putative branch site (score: 3)
tgttaattgtatattg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgatgactatctcaatcttctggagttcactccatggatgaatttttattttttttgcagagtgttaattgtatattgtaaaatgtccagGGTCTTGGTATCTTGAAACAAAAATTCCCAAATACTCCAGTTTTAGCTTTAACTGCTACTGCAACAGCCAGTGTAAAAGAAGATGTAGTGCAAGCCCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG