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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctccatacattagttttgttcacttccaattacttgtgtgctttagttgcatgttttcagaagaaggtgcattttcactggtgatttggacttcatatttgcaactattacaatatgtttactacttaaattttgctgcagGTTGCTGCTAAGAAGCTGACCCTGAAAAATGTTACAGACTACATTGTTGATGTTGTCTGCAAACGTGCAGAACTTGGTTACAACTATGGTGTTATACTTA

Basic information

species Vitis vinifera
transcript Vv10s0116g00360.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0116g00360.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os06g13810.1 (Oryza sativa), 3'ss of exon 8
gtatctccatacattagttttgttcacttccaattacttgtgtgctttagttgcatgttttcagaagaaggtgcattttcactggtgatttggacttcatatttgcaactattacaatatgtttactacttaaattttgctgcagGTTGCTGCTAAGAAGCTGACCCTGAAAAATGTTACAGACTACATTGTTGATGTTGTCTGCAAACGTGCAGAACTTGGTTACAACTATGGTGTTATACTTA
                                | |  |  ||    | |  ||||  |||||  |||    ||||  |    |  || ||||    | ||  |    || ||| ||  |   ||  |  ||      | ||| |||||||||| ||||||   || || |||| ||| || |||||||||   ||  |||||||||| ||||||||||||||||||||||||||||| || ||||
--------------------------------aatgttgctggagatgatctgcagtttttctaaag----tgcacatggcatattg-tttg---cttattatcattaccatttcagaacacttcttttttg-----tactgtagGTTGCTGCAAAGAAGGAAACTCTTAAAAGTGTCACCGACTACATTACCGACATTGTCTGCAAGCGTGCAGAACTTGGTTACAACTATGGTGTGATCCTTA

upper sequence: Vv10s0116g00360.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G059151_T01 (Zea mays), 3'ss of exon 8
gtatctccatacattagttttgttcacttccaattacttgtgtgctttagttgcatgttttcagaagaaggtgcattttcactggtgatttggacttcatatttgcaactattacaatatgtttactacttaaattttgctgcagGTTGCTGCTAAGAAGCTGACCCTGAAAAATGTTACAGACTACATTGTTGATGTTGTCTGCAAACGTGCAGAACTTGGTTACAACTATGGTGTTATACTTA
                                   |  | | || |   ||| ||| || ||| |      |  |  || | || |  |    | |   |   |     | | |||| ||  |  || |||   |     || |||||||||| |||||||  ||||| || ||||| ||| ||||||||  |||| |  ||||||| |||||||| ||||||||||||||||||||||| ||||
-----------------------------------atatatctgata-ggttacattttctcacat-----tatagctttattgtttgtcataattctgtgcatcattatttcacaa-ataatgtcttctt---tgccattgtagGTTGCTGCAAAGAAGCAAACCCTTAAGAATGTCACAAACTACATTACTGATATCATCTGCAAGCGTGCAGATCTTGGTTACAACTATGGTGTTATCCTTA

upper sequence: Vv10s0116g00360.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G143862_T01 (Zea mays), 3'ss of exon 1
gtatctccatacattagttttgttcacttccaattacttgtgtgctttagttgcat-gttttcagaagaaggtgcattttcactg-gtgatttggacttcatatttgcaactattaca-atatgtttactacttaaattttgctgcagGTTGCTGCTAAGAAGCTGACCCTGAAAAATGTTACAGACTACATTGTTGATGTTGTCTGCAAACGTGCAGAACTTGGTTACAACTATGGTGTTATACTTA
                                                   | ||| ||| ||      |||| |||| |   |   |  ||   | ||| | |     | |||| || | ||  |  ||  ||   |     || |||||||||| |||||    ||||| || ||||| ||| ||||||||  |||| |  ||||||| |||||||| ||||||||||||||||||||||| ||||
---------------------------------------------gcagactacattgttatctctgataggttcattatggttttattgttcataattc-tgtgcatcattatttcacaaataatgtctttttt--tgccattgtagGTTGCTGCGAAGAAAGAAACCCTTAAGAATGTCACAAACTACATTACTGATATCATCTGCAAGCGTGCAGATCTTGGTTACAACTATGGTGTTATCCTTA

upper sequence: Vv10s0116g00360.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA15G11890.1 (Glycine max), 3'ss of exon 8
-------gtatctccatacattagttttgttcacttccaattacttgtgtgctttagttgcatgttttcagaagaaggtgcattttcactggtgat-ttggacttcatatttgcaactattacaatatgtttactacttaaattttgctg--cagGTTGCTGCTAAGAAGCTGACCCTGAAAAATGTTACAGACTACATTGTTGATGTTGTCTGCAAACGTGCAGAACTTGGTTACAACTATGGTGTTATACTTA
          ||  |||| ||| |||   || |  |   | |  ||||      |||  | |  |    | || ||       || || || | || |     || |  |||||   ||| | ||| || ||   ||  | | |   ||   ||||||||||| || ||||||||  |||||||||| |||||||| || || |||||||| || ||| | || ||| ||  |||||| ||||||||||| ||||
gttcttcacttcctcatatatttgttcaatttatct---agtgtttgtacatactaggggtagatgaaaaaaataaaaaatgcttcca-tgttaatctcatgattaaagtttgcttttatcaaaatttgatttaaacccataatacacttttcagGTTGCTGCAAAAAAGCTGACGTTGAAAAATGTCACAGACTATATCGTAGATGTTGTTTGTAAAAGAGCTGAAATTAATTACAATTATGGTGTTATTCTTA

upper sequence: Vv10s0116g00360.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA09G01050.1 (Glycine max), 3'ss of exon 8
-------gtatctccatacattagttttgttcacttccaattacttgtgtgctttagttgcatgttttcagaagaaggtgcattttcactggtgatttggacttcatatttgcaactattacaatatgttt--actacttaaattt-tgctgcagGTTGCTGCTAAGAAGCTGACCCTGAAAAATGTTACAGACTACATTGTTGATGTTGTCTGCAAACGTGCAGAACTTGGTTACAACTATGGTGTTATACTTA
          ||  |||| ||| |||   || |  |    ||   |   |||||  | |  |||  || | || ||  ||| |      |  |    ||   || |  |||||   ||| | ||  || ||  |   | |||||      | ||||||||||| |||||||||||  |||||||||| || ||||| || || || ||||| || ||| | || ||| ||  ||||||||||||||| || ||||
gttcctcacttcctcatatatttgttcaatttatctagtgtt-tgtacatgcttggggtagatgaattaaaaaaaaaatgcttccgtgttaatatcatga--ttaaagtttgcttttataaaaaattgatttaaacccataaatacacttttcagGTTGCTGCAAAGAAGCTGACATTGAAAAATGTCACTGACTATATCGTAGACGTTGTTTGTAAAAGAGCTGAAATTAATTACAACTATGGTGTCATTCTTA

upper sequence: Vv10s0116g00360.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT1G12000.1 (Arabidopsis thaliana), 3'ss of exon 8
gtatctccatacattagttttgttcacttccaattacttgtgtgctttagttgcatgttttcagaagaaggtgcattttcac-tggtgatttggacttcatatttgcaactattacaatatgtttactacttaaattttgctgcagGTTGCTGCTAAGAAGCTGACCCTGAAAAATGTTACAGACTACATTGTTGATGTTGTCTGCAAACGTGCAGAACTTGGTTACAACTATGGTGTTATACTTA
                                             || | |     ||| |  |   |  | |   |  ||| ||     || ||  |||  |||  |  || |  | | || |  ||    | | |||  |||||||| ||||  |||||| |||  |||| ||||| ||||||||||| || |||||| ||||||||||||| ||||||||||||||||| ||||| ||||| |
-----------------------------------------tcatttcaatatggggttattggttcagagagacctcacacatgcctcattaga--tca-gtttatatttactcaactttgat--ctggaaatacttttttgcagGTTTCTGCCCAGAAGCAGACTTTGAAGAATGTCACAGACTACATGGTGGATGTTATCTGCAAACGTGCTGAACTTGGTTACAACTACGGTGTCATACTGA

upper sequence: Vv10s0116g00360.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT4G04040.1 (Arabidopsis thaliana), 3'ss of exon 8
gtatctccatacattagttttgttcacttccaattacttgtgtgctttagttgcatgttttcagaagaaggtgcattttcactggtgatttg-gacttcatat-ttgcaactat--tacaatatgtttactacttaaattttgctgcagGTTGCTGCTAAGAAGCTGACCCTGAAAAATGTTACAGACTACATTGTTGATGTTGTCTGCAAACGTGCAGAACTTGGTTACAACTATGGTGTTATACTTA
                                                    | |   ||| ||        || | |||| | ||| |||  |  ||  ||| || ||| |||  |   | |  |  |   |   ||  |   ||||||||  ||  |||||||| ||  ||||||||||||||||  |||||||||||||  |||  ||||| ||||||  |||||| ||||| ||||| || ||| 
----------------------------------------------------gtac-ctttgagtcactcaagcttcttcattcgtggtttttggtttgctatatttcaaatatggtttgagaactagaaagcaccaacatatatgcagGTTTTTGAGAAGAAGCTTACGTTGAAAAATGTTACAGATAACATTGTTGATGTGATCTATAAACGAGCAGAAAATGGTTATAACTACGGTGTCATTCTTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161710861|gb|FC058565.1|FC058565
EST:     TGGAGTGTGCTTTGCAAACTCATCCAAACATTACAATTATTGGTGAAGAG                         GTTGCTGCTAAGAAGCTGACCCTGAAAAATGTTACAGACTACATTGTTGAT
genomic: TGGAGTGTGCTTTGCAAACTCATCCAAACATTACAATTATTGGTGAAGAGgtatctccat ... tttgctgcagGTTGCTGCTAAGAAGCTGACCCTGAAAAATGTTACAGACTACATTGTTGAT
EST: gi|37183710|gb|CF603064.1|CF603064
EST:     TGGAGTGTGCTTTGCAAACTCATCCAAACATTACAATTATTGGTGAAGAG                         GTTGCTGCTAAGAAGCTGACCCTGAAAAATGTTACAGACTACATTGTTGAT
genomic: TGGAGTGTGCTTTGCAAACTCATCCAAACATTACAATTATTGGTGAAGAGgtatctccat ... tttgctgcagGTTGCTGCTAAGAAGCTGACCCTGAAAAATGTTACAGACTACATTGTTGAT
EST: gi|110699977|gb|EE077493.1|EE077493
EST:     TGGAGTGTGCTTTGCAAACTCATCCAAACATTACAATTATTGGTGAAGAG                         GTTGCTGCTAAGAAGCTGACCCTGAAAAATGTTACAGACTACATTGTTGAT
genomic: TGGAGTGTGCTTTGCAAACTCATCCAAACATTACAATTATTGGTGAAGAGgtatctccat ... tttgctgcagGTTGCTGCTAAGAAGCTGACCCTGAAAAATGTTACAGACTACATTGTTGAT
EST: gi|110730531|gb|EE107719.1|EE107719
EST:     GGAGTGTGCTTTGCAAACTCATCCAAACATTACAATTATTTGGTGAAGAG                         GTTGCTGCTAAGAAGCTGACCCTGAAAAATGTTACAGACTACATTGTTGAT
genomic: GGAGTGTGCTTTGCAAACTCATCCAAACATTACAATTATT-GGTGAAGAGgtatctccat ... tttgctgcagGTTGCTGCTAAGAAGCTGACCCTGAAAAATGTTACAGACTACATTGTTGAT
EST: gi|71865073|gb|DT014128.1|DT014128
EST:     TGGAGTGTGCTTTGCAAACTCATCCAAACATTACAATTATTGGTGAAGAG                         GTTGCTGCTAAGAAGCTGACCCTGAAAAATGTTACAGACTACATTGTTGAT
genomic: TGGAGTGTGCTTTGCAAACTCATCCAAACATTACAATTATTGGTGAAGAGgtatctccat ... tttgctgcagGTTGCTGCTAAGAAGCTGACCCTGAAAAATGTTACAGACTACATTGTTGAT
EST: gi|110730571|gb|EE107799.1|EE107799
EST:     TGGAGTGTGCTTTGCAAACTCATCCAAACATTACAATTATTGGTGAAGAG                         GTTGCTGCTAAGAAGCTGACCCTGAAAAATGTTACAGACTACATTGTTGAT
genomic: TGGAGTGTGCTTTGCAAACTCATCCAAACATTACAATTATTGGTGAAGAGgtatctccat ... tttgctgcagGTTGCTGCTAAGAAGCTGACCCTGAAAAATGTTACAGACTACATTGTTGAT
EST: gi|161714537|gb|FC062987.1|FC062987
EST:     TGGAGTGTGCTTTGCAAACTCATCCAAACATTACAATTATTGGTGAAGAG                         GTTGCTGCTAAGAAGCTGACCCTGAAAAATGTTACAGACTACATTGTTGAT
genomic: TGGAGTGTGCTTTGCAAACTCATCCAAACATTACAATTATTGGTGAAGAGgtatctccat ... tttgctgcagGTTGCTGCTAAGAAGCTGACCCTGAAAAATGTTACAGACTACATTGTTGAT
EST: gi|71857501|gb|DT006556.1|DT006556
EST:     GGAGTGTGCTTTGAC-AACTCATCCAAACATTACAATTATTGGTGAAGAG                         GTTGCTGCTAAGAAGCTGACCCTGAAAAATGTTACAGACTACATTGTTGAT
genomic: GGAGTGTGCTTTG-CAAACTCATCCAAACATTACAATTATTGGTGAAGAGgtatctccat ... tttgctgcagGTTGCTGCTAAGAAGCTGACCCTGAAAAATGTTACAGACTACATTGTTGAT
EST: gi|161719694|gb|FC067068.1|FC067068
EST:     GGAGTGTGCTTTGCAAACTCATCCAAACATTACAATTATTGGTGAAGAG                         GTTGCTGCTAAGAAGCTGACCCTGAAAAATGTTACAGACTACATTGTTGAT
genomic: GGAGTGTGCTTTGCAAACTCATCCAAACATTACAATTATTGGTGAAGAGgtatctccat ... tttgctgcagGTTGCTGCTAAGAAGCTGACCCTGAAAAATGTTACAGACTACATTGTTGAT
EST: gi|27581975|gb|CB004670.1|CB004670
EST:     GCAAACTCATCCAAACATTACAATTATTGGTGAAGAG                         GTTGCTGCTAAGAAGCTGACCCTGAAAAATGTTACAGACTACATTGTTGAT
genomic: GCAAACTCATCCAAACATTACAATTATTGGTGAAGAGgtatctccat ... tttgctgcagGTTGCTGCTAAGAAGCTGACCCTGAAAAATGTTACAGACTACATTGTTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggacttcatatttgcaactattacaatatgtttactacttaaattttgctgcagGTTGCTGCTAAGAAGCTGACCCTGAAAAATGTTACAGACTACATTGTTGATGTTGTCTGCAAACGTGCAGAACTTGGTTACAACTATGGTGTTATACTTA
                                            ttttgct  CT-rich tract
                   tattacaatatgttta  TA-rich tract