Sequence
atgc intronic sequence ATGC exonic sequence...tgctgtatatgtgtttgtccttttgtgttatattgatttgacatattacagtggtgtttctaggtaatgtatattcaagttatttaactttggttttcagGCGATGTCAAGGTGCAGCCAACCTATACCTTGCAGTGCTTTCAACAATGATGGCTCAATATTTGTGTATTCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g09150.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA15G05740.1 (Glycine max), 3'ss of exon 8
--tgctgtatatgtgtttgtc-cttttgtgttatattgatttg-acatattacagtggtgtttctag-gtaat-gtatattcaagttatttaactttggttt---tcagGCGATGTCAAGGTGCAGCCAACCTATACCTTGCAGTGCTTTCAACAATGATGGCTCAATATTTGTGTATTCA
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gttattccatttttattaaacacttccattcaatcctaactgacacatattgttgcaatatttttggcataattacatgcttatctaatgcaaacttgtcttatttcagGCCATGTTGAGATGCAGCCAACCTATTCCTTGCAGTACCTTCAACAATGATGGTTCAATATTTGCTTACTCA
upper sequence: Vv09s0002g09150.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA08G19260.1 (Glycine max), 3'ss of exon 8
--tgctgtatatgtgtttgtc-cttttgtgttatattgatttgac--atattacagtggtgtttctag-gtaat-gtatattcaagttatttaactttggttt---tcagGCGATGTCAAGGTGCAGCCAACCTATACCTTGCAGTGCTTTCAACAATGATGGCTCAATATTTGTGTATTCA
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gttattccatttttattaaacacttccattcaattcctaaccaacacatattgtagtgatatttttggcataatcacatgcttatctaatgcaaacgtgtcttgtttcagGCCATGTTGAGATGCAGCCTACCTATTCCTTGCAGTACCTTCAACAATGATGGTTCAATATTTGCTTACTCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttacagtggtgtttctaggtaatgtatattcaagttatttaactttggttttcagGCGATGTCAAGGTGCAGCCAACCTATACCTTGCAGTGCTTTCAACAATGATGGCTCAATATTTGTGTATTCA
atttaac putative branch site (score: 3)
ttttc putative PPT
taatgtatattcaagt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgctgtatatgtgtttgtccttttgtgttatattgatttgacatattacagtggtgtttctaggtaatgtatattcaagttatttaactttggttttcagGCGATGTCAAGGTGCAGCCAACCTATACCTTGCAGTGCTTTCAACAATGATGGCTCAATATTTGTGTATTCA
tgctgta
- - - - - - - - - ccttttg