Sequence
atgc intronic sequence ATGC exonic sequencegtaaagaatttgttgtttccttgtttattttattaaccatgagttgttgattttgtaatgtgttcttttactgtatgcagATATGGGACTCTGTTCCTAAGCCACAAGCACATAAGGAAACTCCGCTGAGTGAATTTTTTAAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g02200.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA07G01230.1 (Glycine max), 3'ss of exon 8
gtaaagaatttgttgtttccttgtttatt-ttattaa----ccatgagttgttgattttgtaatgtgtt-cttttactgtatgcagATATGGGACTCTGTTCCTAAGCCACAAGCACATAAGGAAACTCCGCTGAGTGAATTTTTTAAT
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gtaatgcagtgctttcatctctgtatattgttattgaattgttatagacttcttttctacctttgctttactcttttcctctgcagATATGGGACTCTGTTCCTAAACCACAGGCCCACAAGGAAACCCCATTAAGTGAATTTTTCAAT
upper sequence: Vv09s0002g02200.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA08G20610.1 (Glycine max), 3'ss of exon 8
gtaaagaatttgttgtttccttgtttatt-ttattaa----ccatgagttgttgattt---tgtaatgtgtt-cttttactgtatgcagATATGGGACTCTGTTCCTAAGCCACAAGCACATAAGGAAACTCCGCTGAGTGAATTTTTTAAT
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gtaatgcagtgctttcatctctgtatattgttattgaattgttatagactttttacttacctttcttgctttactcttttcctctgcagATATGGGATTCTGTTCCTAAACCACAGGCCCACAAGGAAACCCCATTAAGTGAATTTTTCAAT
upper sequence: Vv09s0002g02200.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA13G42650.1 (Glycine max), 3'ss of exon 9
gtaaagaatttgttgtttccttgt-ttattttattaaccatgagt----tgttgattttgtaatgtgttcttttactgtat-----gcagATATGGGACTCTGTTCCTAAGCCACAAGCACATAAGGAAACTCCGCTGAGTGAATTTTTTAAT
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gtaatgcagttatttcacttttatatgatgttatcaaataggtatccaatttttttgttgacctttatttctctactttttacttggcagATATGGGACTCTGTTCCTAAACCAGATGCTCATAAAGAAACCCCATTAAGTGAATTTTTCATT
upper sequence: Vv09s0002g02200.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT1G72960.1 (Arabidopsis thaliana), 3'ss of exon 8
---gtaaagaatttgttgtttccttgtttattttattaaccatgagttgttgattttgtaatgtgttcttttactgtatgcagATATGGGACTCTGTTCCTAAGCCACAAGCACATAAGGAAACTCCGCTGAGTGAATTTTTTAAT
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gtaaaagaggagtgagtgactttcagctaattccaa-gttgataagctgatcaccgttttgttttgttcttcattgtg-gcagATATGGGATTCTGTTCCAAAGCCTGAAGCACACAAGGAAACTCCTCTAAGTGACTTTTTCAAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tattttattaaccatgagttgttgattttgtaatgtgttcttttactgtatgcagATATGGGACTCTGTTCCTAAGCCACAAGCACATAAGGAAACTCCGCTGAGTGAATTTTTTAAT
ttcttttact CT-rich tract
attttgtaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaagaatttgttgtttccttgtttattttattaaccatgagttgttgattttgtaatgtgttcttttactgtatgcagATATGGGACTCTGTTCCTAAGCCACAAGCACATAAGGAAACTCCGCTGAGTGAATTTTTTAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA