Sequence
atgc intronic sequence ATGC exonic sequence...tttttgggcatcttgatatttctttttgattgatccctttgtcttcttttctgtactattttattgaaacattcttgaatcttatatctggggattgcagGGCAGATTCTGCAGCAGTAGCTATTACCACAACCGACTTAGTGAGCAAGAGTGTGGCAATTGAATCTGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0040g03320.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA13G19450.1 (Glycine max), 3'ss of exon 8
tttttgggcatcttgatatttctttttgattgatccctttgtcttcttttctgta-ctatttt--attgaaacattc-ttgaatcttatatctggggattgcagGGCAGATTCTGCAGCAGTAGCTATTACCACAACCGACTTAGTGAGCAAGAGTGTGGCAATTGAATCTGAG
|| || |||| || ||| || | | || || |||| ||| ||| ||| ||| | |||||||| | ||| |||||||||||||||||| || || || ||||| || || | || |||||||||||||||||||| ||| |
---tttggtttcttaatctttgaaaagtatatagctctgaacaacacttgctgtgtctacttttcattccttttttcatcaaatcttattagcttgcatt-cagGGCAGATTCTGCAGCTGTGGCAATCACCACTACAGATCTTGTTAGCAAGAGTGTGGCAATTGAGTCTCTG
upper sequence: Vv08s0040g03320.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA10G05090.1 (Glycine max), 3'ss of exon 7
tttttgggcatcttgatatttctttttgattgatccctttgt----cttcttttctgtactattttattgaaacattcttgaatcttatatctggggattgcagGGCAGATTCTGCAGCAGTAGCTATTACCACAACCGACTTAGTGAGCAAGAGTGTGGCAATTGAATCTGAG
|| | |||| || ||| || ||| || ||| | ||| |||| || || | | |||||||| | || |||||||||||||||||| || || || ||||| || || | || |||||||||||||||||||| ||| |
---tttagtttcttaatctttgaaaagtatatatctctgaacaacacttgctgtctctacttttcaatcctttgttcatcaaatcttattagcttgcat-acagGGCAGATTCTGCAGCTGTGGCAATCACCACGACAGATCTTGTTAGCAAGAGTGTGGCAATTGAGTCTCTG
upper sequence: Vv08s0040g03320.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT2G37500.1 (Arabidopsis thaliana), 3'ss of exon 8
----tttttgggcatcttgatatttctttttgattgatc--cctttgtcttc-ttttctgtactattttattgaaacattcttgaatcttatatctgg-ggattgcagGGCAGATTCTGCAGCAGTAGCTATTACCACAACCGACTTAGTGAGCAAGAGTGTGGCAATTGAATCTGAG
| | ||| || | |||||| || | | |||||| ||||| | || |||| ||| || | ||| || | | ||||||||||||||||| || |||||||| || ||||| || | || ||||||||||| ||| ||||||| ||
gtataatcttcttttctcaatctctcttttaagttcgtaggtcacagtcttcactttctttggtagcc-attggg-cat-----aaccatatgaatgttgaaatgcagGGCAGATTCTGCTGCTGTAGCTATCACAACAACAGATCTTGTAAGCAAGAGTGTTGCAGTTGAATCACAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122689373|gb|EC937903.1|EC937903EST: CTCAATTCCCTTCCAAAGCTTGTTAGTTCACTATCATCGTCAACTGAGGG GGCAGATTCTGCAGCAGTAGCTATTACAACAACCGACTTAGTGAGCAAGAG
genomic: CTCAATTCCCTTCCAAAGCTTGTTAGTTCACTATCATCGTCAACTGAGGGgtacagcttt ... gggattgcagGGCAGATTCTGCAGCAGTAGCTATTACCACAACCGACTTAGTGAGCAAGAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttttctgtactattttattgaaacattcttgaatcttatatctggggattgcagGGCAGATTCTGCAGCAGTAGCTATTACCACAACCGACTTAGTGAGCAAGAGTGTGGCAATTGAATCTGAG
tattttattgaaacat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttttgggcatcttgatatttctttttgattgatccctttgtcttcttttctgtactattttattgaaacattcttgaatcttatatctggggattgcagGGCAGATTCTGCAGCAGTAGCTATTACCACAACCGACTTAGTGAGCAAGAGTGTGGCAATTGAATCTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
-ttttggg
- - - - - - - - - - - - - - - tgatccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaacat