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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttgggtttctacatacctttatttccttaaaaattatgaggatattagtcaggcatgactgccatcatatgttcacttaattctcttaccttaattttgtagAATGACTGGTCAAGGTTAGAGGAGCCATATGGAAGCATATTTTTGAGCATTCCAACTATGCTTGATGCATCATTGGCTCCAGAAGGTCGCCATATTCTTC

Basic information

species Vitis vinifera
transcript Vv08s0032g00800.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0032g00800.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G108457_T02 (Zea mays), 3'ss of exon 8
gtatttgggtttctacatacctttatttccttaaaaattatgaggatattagtcaggcatgactgccatcatatgttcacttaattctcttaccttaattttgtagAATGACTGGTCAAGGTTAGAGGAGCCATATGGAAGCATATTTTTGAGCATTCCAACTATGCTTGATGCATCATTGGCTCCAGAAGGTCGCCATATTCTTC
                           |     | | |  |||| |  | |||  | ||| | |  | |  | | |  |     |  |     ||    || | || || | |||   |  || ||  | || ||||||||||||||||| || ||||| ||  | |||||| ||||||| ||||| ||||| | |||||| ||||
--------------------------gtatgccatactgttgagtacttgagtttgacatcagtagcgttttctttgtatgacctgtttgagtctatgattggcagGATAATTGGAATAATTTGGAAAAACCCTATGGAAGCATATTTTTAAGTATTCCTACAGTTCTTGATCCATCATTAGCTCCCGAAGGACACCATATACTTC

upper sequence: Vv08s0032g00800.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA02G34060.1 (Glycine max), 3'ss of exon 8
gtatttgggtttctacatacctttatttccttaaaaattatgaggatattagtcaggcatgactgccatcatatgttcacttaattctcttaccttaattttgtagAATGACTGGTCAAGGTTAGAGGAGCCATATGGAAGCATATTTTTGAGCATTCCAACTATGCTTGATGCATCATTGGCTCCAGAAGGTCGCCATATTCTTC
||| ||||   | | |  | |||   |||||||| | |      | | |     | | || | |   |  |||||        |||  |||  |  |  | | ||||   ||||||| |  || ||||||||||||||||| || ||| | || || |||||| | |||||| ||||||||||||| ||||| || ||||| ||||
gtagttggaagtttgctcaacttgtattccttaatagtctctgtgctgtaga--atgaataatta--actatatgc-------atttccttggc--acctctctagAGCAACTGGTCCAAATTGGAGGAGCCATATGGAAGTATCTTTCTAAGTATACCAACTGTTCTTGATTCATCATTGGCTCCTGAAGGCCGTCATATCCTTC

upper sequence: Vv08s0032g00800.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA10G10990.1 (Glycine max), 3'ss of exon 8
gtatttgggtttctacatacctttatttccttaaaaattatgaggatattagtcaggcatgactgccatcatatgttcacttaattctcttaccttaattttgtagAATGACTGGTCAAGGTTAGAGGAGCCATATGGAAGCATATTTTTGAGCATTCCAACTATGCTTGATGCATCATTGGCTCCAGAAGGTCGCCATATTCTTC
||| ||||   | | |  | |||   |||||||| | |  |   |   |    ||   || | |  | | || | | || || ||   |       |  | | ||||   ||||||| |  || ||||||||||||||||| || ||| | || || |||||| | |||||| ||||||||||||| ||||| || ||||| ||||
gtagttggaagtttgctcaacttatattccttaatagtctttgtgccttagaacaa--ataattaactttatttatgcatttcatctgc-------acctctctagAGCAACTGGTCCAAATTGGAGGAGCCATATGGAAGTATCTTTCTAAGTATACCAACTGTTCTTGATTCATCATTGGCTCCTGAAGGCCGTCATATCCTTC

upper sequence: Vv08s0032g00800.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT1G06820.1 (Arabidopsis thaliana), 3'ss of exon 8
gtatttgggtttctacatacctttatttcct--taaaaattatgaggatattagtcaggcatgactgccatcatatgttcacttaattctcttaccttaattttgtagAATGACTGGTCAAGGTTAGAGGAGCCATATGGAAGCATATTTTTGAGCATTCCAACTATGCTTGATGCATCATTGGCTCCAGAAGGTCGCCATATTCTTC
                 |    |  ||||||  ||| |  |||      | | | ||||  | |  |  ||   ||    ||||  |  | || |   |  |  |||| | || |||   |   | |||||||| ||||| || || ||  | ||||||||||| || |||||| |||| ||||||||||| ||||| ||||| ||||
----------------gtttgatagtttcctactaagatctatt----cacttgccaggttt-atagttattgaatagcgactt--tcgttttgctgca--tccgtagGACGATTGGAAGAATCTGGAGGAGCCTTATGGCAGTATTTTCCTCAGCATTCCAACCATTCTTGATTCATCTTTGGCTCCAGATGGTCGACATATACTTC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110389204|gb|EC954024.1|EC954024
EST:     AAGCTGAGGTTTTGCCACCTGATACAGATTGCCACCATTTTGTTCTTGAG                         AATGACTGGACAAGGTTAGAGGAGCCATATGGAAGCATATTTTTGAGCATT
genomic: AAGCTGAGGTTTTGCCACCTGATACAGATTGCCACCATTTTGTTCTTGAGgtatttgggt ... aattttgtagAATGACTGGTCAAGGTTAGAGGAGCCATATGGAAGCATATTTTTGAGCATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcaggcatgactgccatcatatgttcacttaattctcttaccttaattttgtagAATGACTGGTCAAGGTTAGAGGAGCCATATGGAAGCATATTTTTGAGCATTCCAACTATGCTTGATGCATCATTGGCTCCAGAAGGTCGCCATATTCTTC
                                           ttaattttgta  TA-rich tract