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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgttttcttctgcatccttatgggaccctcttgctttggtttttaccatcacatggaatgattcataggatgttcaattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG

Basic information

species Vitis vinifera
transcript Vv07s0031g00920.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os03g09250.1 (Oryza sativa), 3'ss of exon 8
---------------gtctgttttcttctgcatccttatgggacc-ctcttgctttggtttttaccatcaca------tggaatgattcataggatgttcaattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG
               | |||   ||   ||  ||  |   |  |  |  ||||     ||||| ||| || |      |    || |   |    ||||    | ||||||| ||||| ||||||||||| ||||| || |||||||| || |||||||||||||| || || 
gtaagagttctgatggactgagatcaattgactctctgctgctctgcaattgccaccctttttgccagcaaaattgactatgttgttgtttcacttgttatcctgtgcagGAGAAGTTCCATTCCTTCCATCCAGTGGCTACCATCCTGAGCTACCTCACCAAGGCACCCCTT

upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os03g09250.2 (Oryza sativa), 3'ss of exon 8
---------------gtctgttttcttctgcatccttatgggacc-ctcttgctttggtttttaccatcaca------tggaatgattcataggatgttcaattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG--------------------
               | |||   ||   ||  ||  |   |  |  |  ||||     ||||| ||| || |      |    || |   |    ||||    | ||||||| ||||| ||||||||||| ||||| || |||||||| || |||||||||||||| || ||                     
gtaagagttctgatggactgagatcaattgactctctgctgctctgcaattgccaccctttttgccagcaaaattgactatgttgttgtttcacttgttatcctgtgcagGAGAAGTTCCATTCCTTCCATCCAGTGGCTACCATCCTGAGCTACCTCACCAAGGCACCCCTTGTGAGTGCATACATGCATCT

upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G010768_T01 (Zea mays), 3'ss of exon 2
gtctgttttcttctgcatccttatgggaccctcttgctttggtttttaccatcacatggaatgattcataggatgttcaattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG
||  |    |  |       | |    |  |   |    || ||     | |||      || ||  |  |  | |   ||| ||||||||||||| || ||||||||||| || ||||||||||| || |||||||||||||| || |||
gtaagagcccaccaagtgaataacccaaagcatgttaggtgattcaacgcttca-gcaccatcatctaatgtctctctcattatgcagGACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACCAAGGCACCACTG

upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G392513_T02 (Zea mays), 3'ss of exon 6
gtctgttttcttctgcatccttatgggaccctcttgctttggtttttaccatcaca-tggaatgattcataggatgttcaattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG
||  |    |  |       | |   ||  |   ||||  |   || | |    ||     || ||  |  |  | |   ||| ||||||||||||| || ||||||||||| || ||||||||||| || |||||||||||||| || |||
gtaagagcccaccaagtgaataactcgaagca--tgctaggtgattcagcgcttcagcaccatcatctaatgtctctctcattatgcagGACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACCAAGGCACCACTG

upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G004528_T03 (Zea mays), 3'ss of exon 8
gtctgttttcttctgcatccttatgggaccctcttgctttggt-ttttaccatcacatggaatgattcataggatgttcaattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG
||  |    |      |  |  | |    |    || ||  |   ||   ||         || ||  |  |  | |   ||| ||||||||||||| || ||||||||||| || ||||||||||| || |||||||||||||| || |||
gtaagagcccacgaataatccgaagcatgctgggtgattcagcgcttcggcaatcagcaccatcatctaacgtctctctcattatgcagGACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACCAAGGCACCACTG

upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G155242_T01 (Zea mays), 3'ss of exon 8
-----gtctgttttcttctgcatccttatgggaccctcttgctttggtttttaccatcacatggaatgattcataggatgttcaattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG
       |        |    | ||| |  | || ||    |  | | |  ||  | ||| |  |||   |  | |  |  ||  || |||||||||| || || ||||||||||| || ||||||||||| || |||||||||||||| || |||
gtaagagccccccaagtgattaacctgaaagcacgctgc-acgctaggtgatat-agcacttttaataccttctggtgt-ctctcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG

upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G145638_T01 (Zea mays), 3'ss of exon 4
-----gtctgttttcttctgcatccttatgggaccctcttgctttggt-ttttaccatcacatggaatgattcataggatgttcaattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG
       |        |    | ||  | |    |    || ||  |   || | ||   || | |        ||   | |   ||| |||| |||||||| || ||||||||| | || ||||||||||| || |||||||||||||| || || 
gtaagagcccaccaagtgaataacccgaagcatgctaggtgattcagcgcttcagcacttca-gcaccatcatctaatgtctctcattatgcaagACAAGTTCCACTCCTTCCACTCGGTGGCCACCATCCTTAGCTACCTCACCAAGGCACCACTA

upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA08G14670.2 (Glycine max), 3'ss of exon 8
gtctgttttcttctgcatc----cttatgggaccctcttgctttggtttttaccatcacatggaatgattcataggatgttcaattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG
|| ||   | |  ||| |      | ||   | |||||   | |  | ||||   |   |  || | |   ||  | |  |   |||  ||||  ||||| || || |||||||||||||| ||||||||||||||||| |||||||||||||||
gtttgccatatgttgcttaaccattcattccaacctctatttcttatctttagttttttaaagactcaa--atgagtttatggctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTG

upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA08G14670.1 (Glycine max), 3'ss of exon 8
gtctgttttcttctgcatc----cttatgggaccctcttgctttggtttttaccatcacatggaatgattcataggatgttcaattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG-------------------------------------
|| ||   | |  ||| |      | ||   | |||||   | |  | ||||   |   |  || | |   ||  | |  |   |||  ||||  ||||| || || |||||||||||||| ||||||||||||||||| |||||||||||||||                                     
gtttgccatatgttgcttaaccattcattccaacctctatttcttatctttagttttttaaagactcaa--atgagtttatggctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGGTAAGTATAATGTATCTGATTCATAATTGTTCAGTGA

upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA05G31450.3 (Glycine max), 3'ss of exon 8
-------gtctgttttcttctgcatc-cttatgggaccctcttgctttggtttttaccatcacatggaatgattcataggatgttcaattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG----
        | | | |  | ||  |||  | ||   |  ||||  || |  ||||||   |   |  || | |   ||  | |  |   ||   ||||  || || || || |||||||||||||| |||||||| |||||||| |||||||||||||||    
gtttgtcatatatatgttgcttaatcattcattccaagctctatctcttatttttagttttttaaagactcaa--atgagtttatggcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAA

upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA05G31450.4 (Glycine max), 3'ss of exon 5
-------gtctgttttcttctgcatcctt-atgggaccctcttgctttggtttttaccatcacatggaatgattcataggatgttcaattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG
        | | | |  | ||  ||| || ||   |  ||||  || |  ||||||   |   |  || | |   ||  | |  |   ||   ||||  || || || || |||||||||||||| |||||||| |||||||| |||||||||||||||
gtttgtcatatatatgttgcttaatcattcattccaagctctatctcttatttttagttttttaaagactcaa--atgagtttatggcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTG

upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT2G22240.1 (Arabidopsis thaliana), 3'ss of exon 6
gtctgttttcttctgcatccttat-gggaccctcttgctt--tggtttttaccatcacatggaatgattcataggatgttcaattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG-------------------------------------
|| ||| |||   |   |  |||    ||  |||  | ||  ||  ||||    |  ||||   ||| ||      | |||  | || ||||  |||||||| || |||||||| || || ||||| |||||||||||||| ||||| |||||                                      
gtttgtattccgttagttagttaccaagaaactcgagattggtgagtttttttttttcatgtt-tgaatc------tattc--tctttcagGGGAAGTTTCACTCTTTCCACCCGGTAGCTACCATACTCAGTTACCTCACAAAGGCACCTCTTGTACCGCCCGGAACACCGGTGGTTAACGCTCTGTCGA

upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT4G39800.1 (Arabidopsis thaliana), 3'ss of exon 8
gtctgttttcttctgcatcct-tatgggaccctcttgctttggtttttaccatcacatggaat-gattcataggatgttcaattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG-------------------------------------
    |||      | ||   |  |||  |   |      |  ||||| ||     |  ||  | |||   | | |   ||  ||| |||||  |||||||| || ||||| || || |||||||| ||||| |||||||||||||| || ||                                      
----gttcgtcagttcacagtacatgttattttgggttctctgttttcactgaaccgcggttttgatgttttgaaacatctttttggcagGGAAAGTTTCACTCTTTCCATCCTGTGGCCACCATACTCAGCTACCTCACCAAGGCACCACTTGTACCGCCGGGAACTCCGGTGATTAACGCACTGTCGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110380748|gb|EC946038.1|EC946038
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|32245283|gb|CD711102.1|CD711102
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110380224|gb|EC945471.1|EC945471
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|27581907|gb|CB004602.1|CB004602
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110371149|gb|EC934944.1|EC934944
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110703366|gb|EE080147.1|EE080147
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCANAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|27584208|gb|CB006903.1|CB006903
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110392888|gb|EC957465.1|EC957465
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|18458958|gb|BM437236.1|BM437236
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|27580032|gb|CB002727.1|CB002727
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110687646|gb|EE065294.1|EE065294
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|29784522|gb|CB345364.2|CB345364
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|32245038|gb|CD710857.1|CD710857
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|34546447|gb|CF514679.1|CF514679
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110698809|gb|EE076731.1|EE076731
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110367003|gb|EC930923.1|EC930923
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110686165|gb|EE063519.1|EE063519
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACNAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110715508|gb|EE093637.1|EE093637
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110699239|gb|EE076063.1|EE076063
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|30327700|gb|CD010962.1|CD010962
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110373349|gb|EC937577.1|EC937577
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110373310|gb|EC937535.1|EC937535
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110685059|gb|EE063046.1|EE063046
EST:     TCCTTCTTGCTGAGCTCAACACCCGCATCCAGCTCAAAGCTGAAAGAGAG                         GACAAGTTTCATTCCTTCCACC-AGTTGCCACCATCCTCAGTTACCTCAC-
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110426355|gb|EC992761.1|EC992761
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|28966389|gb|CB345422.1|CB345422
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|18458241|gb|BM436519.1|BM436519
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110707572|gb|EE084125.1|EE084125
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCANAGCTGAAAGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|33407001|gb|CF212628.1|CF212628
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|27581095|gb|CB003790.1|CB003790
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110706220|gb|EE081554.1|EE081554
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110394196|gb|EC958827.1|EC958827
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110393199|gb|EC958269.1|EC958269
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|83274450|gb|DV938547.1|DV938547
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCGGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110414138|gb|EC979964.1|EC979964
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|71871789|gb|DT020844.1|DT020844
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|27580245|gb|CB002940.1|CB002940
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|30327647|gb|CD010909.1|CD010909
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACC
EST: gi|34550186|gb|CF518404.1|CF518404
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTC-ACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110704772|gb|EE081830.1|EE081830
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|18458286|gb|BM436564.1|BM436564
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|32268348|gb|CD717507.1|CD717507
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|29784589|gb|CB345506.2|CB345506
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110699378|gb|EE076322.1|EE076322
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCNAC-ATCCTCAGTTACCTCAC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCC-ACCATCCTCAGTTACCTCAC
EST: gi|110426092|gb|EC992489.1|EC992489
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110415028|gb|EC980897.1|EC980897
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110396188|gb|EC961869.1|EC961869
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110397386|gb|EC963121.1|EC963121
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110730377|gb|EE107389.1|EE107389
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110398285|gb|EC964538.1|EC964538
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|32268456|gb|CD717615.1|CD717615
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110420851|gb|EC987136.1|EC987136
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110390762|gb|EC955689.1|EC955689
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|32249601|gb|CD715420.1|CD715420
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110374744|gb|EC939670.1|EC939670
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110423521|gb|EC989867.1|EC989867
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgctttggtttttaccatcacatggaatgattcataggatgttcaattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG
                                          ttcaatttt  TA-rich tract