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gttgggttacttcttttaatttcttgaccctgttttatctgtgatgtaagtggaaagtagcacatgtacataccataaaggcaatccccctctcttcacaactacaaggtaaaactaaagaacaatatgtaatgttctatttgtggtttcactgtacaatagGTGGCTGCTGCCAAAGCAGATTTGAACTACATCGGCTTAGATGGAGAAATTGGTTGCATGGTGAATGGTGCTGGCTTAGCAATGGCTACCATGGATATAA
species | Vitis vinifera |
transcript | Vv07s0005g03790.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGAAACATATATTTGCTCTTCGTGATGCAACACAGGAGGATCCTCGAGAG GTGGCTGCTGCCAAAGCAGATTTGAACTACATCGGCTTAGATGGAGAAATTEST: gi|34545781|gb|CF514013.1|CF514013
genomic: AGAAACATATATTTGCTCTTCGTGATGCAACACAGGAGGATCCTCGAGAGgttgggttac ... tgtacaatagGTGGCTGCTGCCAAAGCAGATTTGAACTACATCGGCTTAGATGGAGAAATT
EST: AGAAACATATATTTGCTCTTCGTGATGCAACACAGGAGGATCCTCGAGAG GTGGCTGCTGCCAAAGCAGATTTGAACTACATCGGCTTAGATGGAGAAATTEST: gi|110379096|gb|EC944270.1|EC944270
genomic: AGAAACATATATTTGCTCTTCGTGATGCAACACAGGAGGATCCTCGAGAGgttgggttac ... tgtacaatagGTGGCTGCTGCCAAAGCAGATTTGAACTACATCGGCTTAGATGGAGAAATT
EST: AGAAACATATATTTGCTCTTCGTGATGCAACACAGGAGGATCCTCGAGAG GTGGCTGCTGCCAAAGCAGATTTGAACTACATCGGCTTAGATGGAGAAATTEST: gi|30255821|gb|CB971953.1|CB971953
genomic: AGAAACATATATTTGCTCTTCGTGATGCAACACAGGAGGATCCTCGAGAGgttgggttac ... tgtacaatagGTGGCTGCTGCCAAAGCAGATTTGAACTACATCGGCTTAGATGGAGAAATT
EST: AGAAACATATATTTGCTCTTCGTGATGCAACACAGGAGGATCCTCGAGAG GTGGCTGCTGCCAAAGCAGATTTGGACTACATCGGCTTAGATGGAGAAATTEST: gi|110733074|gb|EE108915.1|EE108915
genomic: AGAAACATATATTTGCTCTTCGTGATGCAACACAGGAGGATCCTCGAGAGgttgggttac ... tgtacaatagGTGGCTGCTGCCAAAGCAGATTTGAACTACATCGGCTTAGATGGAGAAATT
EST: AGAAACATATATTTGCTCTTCGTGATGCAACACAGGAGGATCCTCGAGAG GTGGCTGCTGCCAAAGCAGATTTGAACTACATCGGCTTAEST: gi|110428351|gb|EC994820.1|EC994820
genomic: AGAAACATATATTTGCTCTTCGTGATGCAACACAGGAGGATCCTCGAGAGgttgggttac ... tgtacaatagGTGGCTGCTGCCAAAGCAGATTTGAACTACATCGGCTTA
EST: AGAAACATATATTTGCTCTTCGTGATGCAACACAGGAGGATCCTCGAGAG GTGGCTGCTGCCAAAGCAGATTTGAACTACATCGGCTTAGATGGAGAAATTEST: gi|110688710|gb|EE067574.1|EE067574
genomic: AGAAACATATATTTGCTCTTCGTGATGCAACACAGGAGGATCCTCGAGAGgttgggttac ... tgtacaatagGTGGCTGCTGCCAAAGCAGATTTGAACTACATCGGCTTAGATGGAGAAATT
EST: AGAAACATATATTTGCTCTTCGTGATGCAACACAGGAGGATCCTCGAGAG GTGGCTGCTGCCAAAGCAGATTTGAACTACATCGGCTTAGATGGAGAAATTEST: gi|110702283|gb|EE080823.1|EE080823
genomic: AGAAACATATATTTGCTCTTCGTGATGCAACACAGGAGGATCCTCGAGAGgttgggttac ... tgtacaatagGTGGCTGCTGCCAAAGCAGATTTGAACTACATCGGCTTAGATGGAGAAATT
EST: TGCAACACAGGAGGATCCTCGAGAG GTGGCTGCTGCCAAAGCAGATTTGAACTACATCGGCTTAGATGGAGAAATTEST: gi|30256398|gb|CB972241.1|CB972241
genomic: TGCAACACAGGAGGATCCTCGAGAGgttgggttac ... tgtacaatagGTGGCTGCTGCCAAAGCAGATTTGAACTACATCGGCTTAGATGGAGAAATT
EST: AGAAACATATATTTGCTCTTCGTGATGCAACACAGGAGGATCCTCGAGAG GTGGCTGCTGCCAAAGCAGATTTGGACTACATCGGCTTAGATGGAGAAATTEST: gi|110714835|gb|EE092196.1|EE092196
genomic: AGAAACATATATTTGCTCTTCGTGATGCAACACAGGAGGATCCTCGAGAGgttgggttac ... tgtacaatagGTGGCTGCTGCCAAAGCAGATTTGAACTACATCGGCTTAGATGGAGAAATT
EST: AGAAACATATATTTGCTCTTCGTGATGCAACACAGGAGGATCCTCGAGAG GTGGCTGCTGCCAAAGCAGATTTGAACTACATCGGCTTAGATGGAGAAATTEST: gi|30305949|gb|CB982743.1|CB982743
genomic: AGAAACATATATTTGCTCTTCGTGATGCAACACAGGAGGATCCTCGAGAGgttgggttac ... tgtacaatagGTGGCTGCTGCCAAAGCAGATTTGAACTACATCGGCTTAGATGGAGAAATT
EST: TGATGCAACACAGGAGGATCCTCGAGAG GTGGCTGCTGCCAAAGCAGATTTGAACTACATCGGCTTAGATGGAGAAATTEST: gi|110362830|gb|EC926386.1|EC926386
genomic: TGATGCAACACAGGAGGATCCTCGAGAGgttgggttac ... tgtacaatagGTGGCTGCTGCCAAAGCAGATTTGAACTACATCGGCTTAGATGGAGAAATT
EST: AGAAACATATATTTGCTCTTCGTGATGCAACACAGGAGGATCCTCGAGAG GTGGCTGCTGCCAAAGCAGATTTGAACTACATCGGCTTAGATGGAGAAATTEST: gi|30256478|gb|CB972321.1|CB972321
genomic: AGAAACATATATTTGCTCTTCGTGATGCAACACAGGAGGATCCTCGAGAGgttgggttac ... tgtacaatagGTGGCTGCTGCCAAAGCAGATTTGAACTACATCGGCTTAGATGGAGAAATT
EST: AGAAACATATATTTGCTCTTCGTGATGCAACACAGGAGGATCCTCGAGAG GTGGCTGCTGCCAAAGCAGATTTGGACTACATCGGCTTAGATGGAGAAATTEST: gi|161713591|gb|FC062524.1|FC062524
genomic: AGAAACATATATTTGCTCTTCGTGATGCAACACAGGAGGATCCTCGAGAGgttgggttac ... tgtacaatagGTGGCTGCTGCCAAAGCAGATTTGAACTACATCGGCTTAGATGGAGAAATT
EST: AGAAACATATATTTGCTCTTCGTGATGCAACACAGGAGGATCCTCGAGAG GTGGCTGCTGCCCAAGCAGATTTGAACTACATCGGCTTAGATGGAGAAATT
genomic: AGAAACATATATTTGCTCTTCGTGATGCAACACAGGAGGATCCTCGAGAGgttgggttac ... tgtacaatagGTGGCTGCTGCCAAAGCAGATTTGAACTACATCGGCTTAGATGGAGAAATT
ggtaaaactaaagaacaatatgtaatgttctatttgtggtttcactgtacaatagGTGGCTGCTGCCAAAGCAGATTTGAACTACATCGGCTTAGATGGAGAAATTGGTTGCATGGTGAATGGTGCTGGCTTAGCAATGGCTACCATGGATATAA
aactaaa putative branch site (score: 2)
tttcact putative PPT
aatatgtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgggttacttcttttaatttcttgaccctgttttatctgtgatgtaagtggaaagtagcacatgtacataccataaaggcaatccccctctcttcacaactacaaggtaaaactaaagaacaatatgtaatgttctatttgtggtttcactgtacaatagGTGGCTGCTGCCAAAGCAGATTTGAACTACATCGGCTTAGATGGAGAAATTGGTTGCATGGTGAATGGTGCTGGCTTAGCAATGGCTACCATGGATATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA