Sequence
atgc intronic sequence ATGC exonic sequence...cctttcattgacttcataaaggtatggaggtctctacttctctgctatcctttaatttattgcccttcaaggcctaatctcatttcaatcatgttcacagGTAAAGTTGGAGGGTTTATTGCTTCAATTCCTGAAGTCATGGTTGCTGCTCTCCTGTGCTTCATGTGGGCAATGCTTGCAGCATTGGGGTTGTCAAATTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0061g01310.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G095611_T03 (Zea mays), 3'ss of exon 8
---------cctttcattgacttcataaaggtatggaggtctctacttctctgctatcctttaatttattgcccttcaaggcctaatctcatttcaatcatgttcacagGTAAAGTTGGAGGGTTTATTGCTTCAATTCCTGAAGTCATGGTTGCTGCTCTCCTGTGCTTCATGTGGGCAATGCTTGCAGCATTGGGGTTGTCAAATTT
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gtaagaaaactattttgcattttcatttcagtgaaaaaattctca-tgctgtgagaaaaggtaatcaaaggttcttgcttatc-actgttattatgactct-tttgtagGAAAAGTCGGTGCATTCATTGCTTCTATTCCTGATGTTATGGTTGCTGCTCTCCTTTGCTTCATGTGGGCTATGCTCTGTGCTCTTGGCTTGTCCAATCT
upper sequence: Vv06s0061g01310.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA12G30670.1 (Glycine max), 3'ss of exon 8
-cctttcattgactt---cataaaggtatggaggtctctacttctctgctatcctttaatttattgcccttcaaggcctaatctcatttcaatcatgttc-acagGTAAAGTTGGAGGGTTTATTGCTTCAATTCCTGAAGTCATGGTTGCTGCTCTCCTGTGCTTCATGTGGGCAATGCTTGCAGCATTGGGGTTGTCAAATTT
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ggtttttagagtctttcccatgtctctgttgcaatctgtactcaactgtagaatttt----tcatgcaaataaaaacatg-tttaattttacttgtactggacagGTAAGGTTGGAGGGTTCATTGCTTCAATTCCTGAAGTCATGGTTGCTGGTCTCCTATGCTTTATGTGGGCTATGCTTGCAGCATTGGGCTTGTCCAATCT
upper sequence: Vv06s0061g01310.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA17G05280.1 (Glycine max), 3'ss of exon 8
-cctttcattgacttcataaaggtatggaggtctctacttctctgctatcctttaatttattgcccttcaaggcctaatctcatttcaatcatgttc-acagGTAAAGTTGGAGGGTTTATTGCTTCAATTCCTGAAGTCATGGTTGCTGCTCTCCTGTGCTTCATGTGGGCAATGCTTGCAGCATTGGGGTTGTCAAATTT
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ggtttttagagtctttctcatgtctctattgcaatttgtactcaactgtagaatttttcat-gcaaataaaaacatg-tttaattttacttgtactggacagGTAAGGTTGGAGGGTTCATTGCTTCAATTCCCGAAGTAATGGTTGCTGGTCTCCTATGCTTTATGTGGGCAATGCTTGCAGCATTGGGCTTGTCTAATCT
upper sequence: Vv06s0061g01310.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA12G09060.1 (Glycine max), 3'ss of exon 8
---cctttcattgacttcataaaggtatggaggtctctacttctctgctatcctttaatttattgcccttcaaggcctaatctcatttcaatcatgttcacagGTAAAGTTGGAGGGTTTATTGCTTCAATTCCTGAAGTCATGGTTGCTGCTCTCCTGTGCTTCATGTGGGCAATGCTTGCAGCATTGGGGTTGTCAAATTT
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tcggcttctcttgttcccattt-gatatagttttgcct-cttgtctgtaaaaaactccttgcaaatttatccatgtttaattttgcttatgccataca-acagGTAAGGTTGGAGGATTCATTGCTTCAATTCCCGAAGTCATGGTTGCTGGTCTCCTCTGCTTTATGTGGGCAATGCTCACAGCATTAGGCTTGTCAAATCT
upper sequence: Vv06s0061g01310.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA11G19420.1 (Glycine max), 3'ss of exon 8
-cctttcattgacttcata-aaggtatggaggtctctacttctctgctatcctttaatttattgcccttcaaggcctaatctcatttcaatcatgttcacagGTAAAGTTGGAGGGTTTATTGCTTCAATTCCTGAAGTCATGGTTGCTGCTCTCCTGTGCTTCATGTGGGCAATGCTTGCAGCATTGGGGTTGTCAAATTT
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agcttctcttgttcccatttgatatagttttgtctct-cgtctgtaaaaagctcctcttgtaaatttatccgtgtttaattttgcttatgccataca-acagGTAAGGTTGGAGGATTCATTGCTTCAATTCCCAAAGTCATGGTTGCTGGTCTCCTCTGCTTTATGTGGGCAATGCTCACAGCATTAGGATTGTCTAATCT
upper sequence: Vv06s0061g01310.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT2G27810.3 (Arabidopsis thaliana), 3'ss of exon 8
-cctttcattg-acttcataaaggtatggaggtctctacttctctgctatcc-tttaatttattgcccttcaaggcctaatctcatttcaatcatgttcacagGTAAAGTTGGAGGGTTTATTGCTTCAATTCCTGAAGTCATGGTTGCTGCTCTCCTGTGCTTCATGTGGGCAATGCTTGCAGCATTGGGGTTGTCAAATTT
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acaagtaactatacatcaatagcatctgaaaattagctcaactgtacaacaggtaccattttttactctctttgactaaaacagtttttgat---gtcctcagGTAAGGTTGGAGGGTTTCTCGCATCAATTCCGCAAGTCATGGTTGCTTCTCTTCTGTGCTTCATGTGGGCAATGTTTACGGCTTTAGGTCTTTCCAACTT
upper sequence: Vv06s0061g01310.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: EFJ34684 (Selaginella moellendorffii), 3'ss of exon 8
cctttcattgacttcataaaggtatggaggtctctacttctctgctatcctttaatttattgcccttcaaggcctaatctcatttcaatcatgttcacagGTAAAGTTGGAGGGTTTATTGCTTCAATTCCTGAAGTCATGGTTGCTGCTCTCCTGTGCTTCATGTGGGCAATGCTTGCAGCATTGGGGTTGTCAAATTT
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---------------------------------gtaagcttctgc-atcattttcttccgtgctttgtcatgctca-tcaagtttccatcac-ttttcagGCAAAGTTGGAGCCTTTCTTGCGTCGATTCCCCAAGTTATGGTGGCTGCGCTCCTGTGCATTATGTGGGCAATGCTGACAGCCTGGGGGCTGTCGTATCT
upper sequence: Vv06s0061g01310.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: EFJ31032 (Selaginella moellendorffii), 3'ss of exon 8
cctttcattgacttcataaaggtatggaggtctctacttctctgctatcctttaatttattgcccttcaaggcctaatctcatttcaatcatgttcacagGTAAAGTTGGAGGGTTTATTGCTTCAATTCCTGAAGTCATGGTTGCTGCTCTCCTGTGCTTCATGTGGGCAATGCTTGCAGCATTGGGGTTGTCAAATTT
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---------------------------------gtaagcttctgc-atcattttcttccttgctttgccatgctca-taaagtttccttcgc-ttttcagGCAAAGTTGGAGCCTTTCTTGCGTCGATTCCCCAAGTTATGGTGGCTGCGCTCCTGTGCATTATGTGGGCAATGCTGACAGCCTGGGGGCTGTCGTATCTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37187747|gb|CF607100.1|CF607100EST: CAGGGCAGTTGAGTTTGGTGCATGCGTTTTGATAGCGCTATCCCTTGTAG GTAAAGTTGGAGGGTTTATTGCTTCAATTCCTGAAGTCATGGTTGCTGCTC
genomic: CAGGGCAGTTGAGTTTGGTGCATGCGTTTTGATAGCGCTATCCCTTGTAGgtaagtgttt ... atgttcacagGTAAAGTTGGAGGGTTTATTGCTTCAATTCCTGAAGTCATGGTTGCTGCTC
EST:
gi|110731292|gb|EE105586.1|EE105586EST: CAGGGCAGTTGAGTTTGGTGCATGCGTTTTGATAGCGCTATCCCTTGTAG GTAAAGTTGGAGGGTTTATTGCTTCAATTCCTGAAGTCATGGTTGCTGCTC
genomic: CAGGGCAGTTGAGTTTGGTGCATGCGTTTTGATAGCGCTATCCCTTGTAGgtaagtgttt ... atgttcacagGTAAAGTTGGAGGGTTTATTGCTTCAATTCCTGAAGTCATGGTTGCTGCTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatcctttaatttattgcccttcaaggcctaatctcatttcaatcatgttcacagGTAAAGTTGGAGGGTTTATTGCTTCAATTCCTGAAGTCATGGTTGCTGCTCTCCTGTGCTTCATGTGGGCAATGCTTGCAGCATTGGGGTTGTCAAATTT
gcctaat putative branch site (score: 3)
tttaatttatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cctttcattgacttcataaaggtatggaggtctctacttctctgctatcctttaatttattgcccttcaaggcctaatctcatttcaatcatgttcacagGTAAAGTTGGAGGGTTTATTGCTTCAATTCCTGAAGTCATGGTTGCTGCTCTCCTGTGCTTCATGTGGGCAATGCTTGCAGCATTGGGGTTGTCAAATTT
- - -cattgac
- - - - - - - - -aaaggta
- - - - - - - - - - - - - - - - -ctacttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccttca