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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaaaacatagaaatcatatttagttgcatttttatgattttatcctcagagatctgtgtttggaattagctgagttgttttcacttatatttctgtctatatcattcttatgggcctcatttgttcttgcagATGGTCAGAAAAAATAATTTCAGCACAGACAGAGTTGTAAGGGATGAATTTGGCATTCGTATAAATGAGGAACTTACATTGGTTGATGCCCGTGTTTTGC

Basic information

species Vitis vinifera
transcript Vv06s0061g01040.t01
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30301734|gb|CB978528.1|CB978528
EST:     TAAGAGCAACATGTCAGCGTCCTAGTGAGAGGGAAGGAAACATTCAAGAG                         ATGGTCAGAAAAAATAATTTCAGCACAGACAGAGTTGTAAGGGATGAATTT
genomic: TAAGAGCAACATGTCAGCGTCCTAGTGAGAGGGAAGGAAACATTCAAGAGgtatgaaaac ... gttcttgcagATGGTCAGAAAAAATAATTTCAGCACAGACAGAGTTGTAAGGGATGAATTT
EST: gi|38516556|gb|CF983731.1|CF983731
EST:     TAAGAGCAACATGTCAGCGTCCTAGTGAGAGGGAAGGAAACATTCAAGAG                         ATGGTCAGAAAAAATAATTTCAGCACAGACAGAGTTGTAAGGGATGAATTT
genomic: TAAGAGCAACATGTCAGCGTCCTAGTGAGAGGGAAGGAAACATTCAAGAGgtatgaaaac ... gttcttgcagATGGTCAGAAAAAATAATTTCAGCACAGACAGAGTTGTAAGGGATGAATTT
EST: gi|110698938|gb|EE077004.1|EE077004
EST:     TAAGAGCAACATGTCAGCGTCCTAGTGAGAGGGAAGGAAACATTCAAGAG                         ATGGTCAGAAAAAATAATTTCAGCACAGACAGAGTTGTAAGGGACGAATTT
genomic: TAAGAGCAACATGTCAGCGTCCTAGTGAGAGGGAAGGAAACATTCAAGAGgtatgaaaac ... gttcttgcagATGGTCAGAAAAAATAATTTCAGCACAGACAGAGTTGTAAGGGATGAATTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttcacttatatttctgtctatatcattcttatgggcctcatttgttcttgcagATGGTCAGAAAAAATAATTTCAGCACAGACAGAGTTGTAAGGGATGAATTTGGCATTCGTATAAATGAGGAACTTACATTGGTTGATGCCCGTGTTTTGC
                                     cctcatttgttctt  CT-rich tract
                    tatatcattcttat  TA-rich tract