1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...aattgcagtctgattgcagttatattagtgaaagacaaaagcaaggaggttaacagtcaaggacatgatacttttttttaatttttttatgacaatgcagATTCAGTACTGCTCAGAAATTAGACAAACTTGGGATGCGAGGAAGTGACAC
species | Vitis vinifera |
transcript | Vv06s0004g03140.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GCTCATTCAAAAGGAATTACAGCATTTATCATCGAGAAGGGAATGCCTGG ATTCAGTACTGCTCAGAAATTAGACAAACTTGGGATGCGAGGAAGTGACACEST: gi|352764155|gb|FQ467725.1|FQ467725
genomic: GCTCATTCAAAAGGAATTACAGCATTTATCATCGAGAAGGGAATGCCTGGgtacttgcac ... gacaatgcagATTCAGTACTGCTCAGAAATTAGACAAACTTGGGATGCGAGGAAGTGACAC
EST: GCTCATTCAAAAGGAATTACAGCATTTATCATCGAGAAGGGAATGCCTGG ATTCAGTACTGCTCAGAAATTAGACAAACTTGGGATGCGAGGAAGTGACACEST: gi|22010794|gb|BQ795828.1|BQ795828
genomic: GCTCATTCAAAAGGAATTACAGCATTTATCATCGAGAAGGGAATGCCTGGgtacttgcac ... gacaatgcagATTCAGTACTGCTCAGAAATTAGACAAACTTGGGATGCGAGGAAGTGACAC
EST: GCTCATTCAAAAGGAATTACAGCATTTATCATCGAGAAGGGAATGCCTGG ATTCAGTACTGCEST: gi|352781928|gb|FQ469225.1|FQ469225
genomic: GCTCATTCAAAAGGAATTACAGCATTTATCATCGAGAAGGGAATGCCTGGgtacttgcac ... gacaatgcagATTCAGTACTGC
EST: GCTCATTCAAAAGGAATTACAGCATTTATCATCGAGAAGGGAATGCCTGG ATTCAGTACTGCTCAGAAATTAGACAAACEST: gi|110729869|gb|EE106297.1|EE106297
genomic: GCTCATTCAAAAGGAATTACAGCATTTATCATCGAGAAGGGAATGCCTGGgtacttgcac ... gacaatgcagATTCAGTACTGCTCAGAAATTAGACAAAC
EST: GCTCATTCAAAAGGAATTACAGCATTTATCATCGAAAAGGGAATGCCTGG ATTCAGTACTGCT
genomic: GCTCATTCAAAAGGAATTACAGCATTTATCATCGAGAAGGGAATGCCTGGgtacttgcac ... gacaatgcagATTCAGTACTGCT
gaggttaacagtcaaggacatgatacttttttttaatttttttatgacaatgcagATTCAGTACTGCTCAGAAATTAGACAAACTTGGGATGCGAGGAAGTGACAC
ttttaat putative branch site (score: 3)
acatgatacttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattgcagtctgattgcagttatattagtgaaagacaaaagcaaggaggttaacagtcaaggacatgatacttttttttaatttttttatgacaatgcagATTCAGTACTGCTCAGAAATTAGACAAACTTGGGATGCGAGGAAGTGACAC
- -tgcagtc
- - - - - tgattgc
- - - - - - - - - - - - - - -gaaagac
- - - - - - - - - - - - - - - - - - -aaagcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggacatg