Sequence
atgc intronic sequence ATGC exonic sequence...gcaagttgcatcaacagacatacctaactgagatatgaccttgattggtgcttttatcatttaataagaagaactattgacatgtttactgttttgttagATACCTTTCAATCTTGTTACCCGCCTTTGGGACACATATCTTGCGGAGGGAGATGCGTTGCCAGATTTCCTTGTGTATATATTTGCCAGTTTTCTTTTAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0094g00070.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA15G03200.1 (Glycine max), 3'ss of exon 8
--------------------------------------------------------------------------gcaagttgcatcaacagacatacctaactgagatatgaccttgattggtgcttttatcatttaataagaa---gaactattgaca----tgtttactgttttgt-----tagATACCTTTCAATCTTGTTACCCGCCTTTGGGACACATATCTTGCGGAGGGAGATGCGTTGCCAGATTTCCTTGTGTATATATTTGCCAGTTTTCTTTTAA
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gtttgctctgaattttttctctcaaaagtgcagtagtcttcgccagagctgcatgtataatttgtaaatcgactgcatatcaagccagaaggacttgttaatttagttagagggaattatggagtacaaaaaatttggcccaattttatgcttttgttaactctgatttctgctttatgtaatcagATACCCTTCCATCTTGTCACACGTCTTTGGGACACATATCTAGCTGAAGGAGATGCCTTACCAGATTTCCTTGTGTATATATCTGCCAGTTTTCTTCTAA
upper sequence: Vv05s0094g00070.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA13G42180.1 (Glycine max), 3'ss of exon 8
----------------------------------------------------------------gcaagttgcatcaacagacatacctaactgagatatgaccttgatt-ggtgcttttatcatttaataagaa--------------gaactattgaca----tgtttactgttttgt-----tagATACCTTTCAATCTTGTTACCCGCCTTTGGGACACATATCTTGCGGAGGGAGATGCGTTGCCAGATTTCCTTGTGTATATATTTGCCAGTTTTCTTTTAA
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gtttgctcataatttttttgtctcaaaagtgcaatagtcttccccagagctgcatgtataactcgtaaattgactgcatat-caagcccgaaggagttgttaatttggtttgagggaattatggagtacaaaaaatttggcccaattttatgcttttgttaactctgatttctgctttatgtaatcagATACCCTTCCATCTTGTCACTCGTCTTTGGGACACATATCTAGCTGAAGGAGATGCCTTACCAGACTTCCTTGTGTATATATCTGCCAGTTTTCTTCTAA
upper sequence: Vv05s0094g00070.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA12G05350.1 (Glycine max), 3'ss of exon 9
---------------------------------------------gcaagttgcat-caacagacatacctaactgagatatgaccttgat-tggtgcttttatcatttaataagaagaactattgaca----tgttt-actgttttgttagATACCTTTCAATCTTGTTACCCGCCTTTGGGACACATATCTTGCGGAGGGAGATGCGTTGCCAGATTTCCTTGTGTATATATTTGCCAGTTTTCTTTTAA
|| | ||| || || | || | || || | || ||| | ||| ||| | || | | || | ||| | | | | | ||||||||| ||| |||| | || |||||||||||||||||| | || || |||||||| || ||||| ||||| || |||||||||||||| || ||| |||
gtttgcaaggatattcttataactataagtgggaaaattttctcaagaacatacatataattgata-acatgacagaatgaaaacattggtctgggataaatatgggatgattttgtgcttttttactaatgatgtctgattatgtaattagATACCATTCCATCTCATCACACGCCTTTGGGACACATATTTAGCTGAAGGAGATGCCTTACCAGACTTCCTAGTATATATATTTGCCAGCTTCCTTCTAA
upper sequence: Vv05s0094g00070.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA11G13330.1 (Glycine max), 3'ss of exon 8
---------------------------------gcaagttgcatcaacagacat------acctaactgagatatgaccttgattggtg-----cttttatcatttaataagaaga-actattgacatgtttactgttttgttagATACCTTTCAATCTTGTTACCCGCCTTTGGGACACATATCTTGCGGAGGGAGATGCGTTGCCAGATTTCCTTGTGTATATATTTGCCAGTTTTCTTTTAA
| ||||| |||||| | | || | || || || ||| | | | | || |||| | |||| ||| | | | | | | ||||||||| ||| |||| | || |||||||||||||||||| | || || |||||||| || ||||| ||||| || |||||||||||||| || ||| |||
gtttgcaatgatattttgttctcttataaggggggaagttttctcaacatataattgataacttgacagaatggaaacattggtctgagataaattgggatgattttgtgcttttttactaatgatgt-ctgattatataattagATACCATTCCATCTCATCACACGCCTTTGGGACACATATTTAGCTGAAGGAGATGCCTTACCAGACTTCCTAGTATATATATTTGCCAGCTTCCTTCTAA
upper sequence: Vv05s0094g00070.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT2G30710.1 (Arabidopsis thaliana), 3'ss of exon 8
--------gcaagttgcat--caacagacatacctaactgagatatga---ccttgattggtgcttttatcatttaataagaagaactattgacatgt-ttactgttttgttagATACCTTTCAATCTTGTTACCCGCCTTTGGGACACATATCTTGCGGAGGGAGATGCGTTGCCAGATTTCCTTGTGTATATATTTGCCAGTTTTCTTTTAA
|| ||| | | || | ||| | | | ||| | | || | | | || || ||| | | ||||| || ||| ||||| || |||||||| | | || || |||||||| |||||||| || ||||||||||||||||| ||||| |||||||||| ||| || ||||| || |
gttaaacatcactttgaactcctacgaatatatgccagtatgccatggtttcttaaatccggtttagtcgcagtttttaattgtgaa-actgacaaacctttgaacttttctagATCCCATTCAATCTCATCAATCGACTATGGGACACTTATCTTGCTGAAGGAGATGCGTTGCCAGACTTCCTGGTGTATATATATGCTAGCTTTCTCTTGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tggtgcttttatcatttaataagaagaactattgacatgtttactgttttgttagATACCTTTCAATCTTGTTACCCGCCTTTGGGACACATATCTTGCGGAGGGAGATGCGTTGCCAGATTTCCTTGTGTATATATTTGCCAGTTTTCTTTTAA
tattgac putative branch site (score: 2)
ctgtttt putative PPT
ttttatcatttaataa TA-rich tract
Putative cis-regulatory sequences
| atgc | intron | ATGC | exonic elements by Pertea et al. |
| ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gcaagttgcatcaacagacatacctaactgagatatgaccttgattggtgcttttatcatttaataagaagaactattgacatgtttactgttttgttagATACCTTTCAATCTTGTTACCCGCCTTTGGGACACATATCTTGCGGAGGGAGATGCGTTGCCAGATTTCCTTGTGTATATATTTGCCAGTTTTCTTTTAA
- - - - catcaac
- - - - - - - - - catacct
- - - - - - - - - - - - - - - - - - - - -tgattgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acatgtt
