1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tcttttcatttgctagaatgatatgttattcacattggatcttcttaaattttaaatgtgatacactggaatttgttcttacaatgtatatctcatctagGTGCTGTCAAGGAAGCGATTGAATCTTTAAGGAGCAATGATGTGAATGCCTTTGTTTTGGACCTCCGAGATAATAG
species | Vitis vinifera |
transcript | Vv05s0077g00060.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CAAACTAGCATCATTCAACCAGAATGCTTCTG GTGCTGTCAAGGAAGCGATTGAATCTTTAAGGAGCAATGATGTGAATGCCTEST: gi|349809249|gb|FQ399023.1|FQ399023
genomic: CAAACTAGCATCATTCAACCAGAATGCTTCTGgtgagcatag ... tctcatctagGTGCTGTCAAGGAAGCGATTGAATCTTTAAGGAGCAATGATGTGAATGCCT
EST: CAAACTAGCATCATTCAACCAGAATGCTTCTG GTGCTGTCAAGGAAGCGATTGAATCTTTAAGGAGCAATGATGTGAATGCCTEST: gi|351036039|gb|FQ463884.1|FQ463884
genomic: CAAACTAGCATCATTCAACCAGAATGCTTCTGgtgagcatag ... tctcatctagGTGCTGTCAAGGAAGCGATTGAATCTTTAAGGAGCAATGATGTGAATGCCT
EST: CAAACTAGCATCATTCAACCAGAATGCTTCTG GTGCTGTCAAGGAAGCGATTGAATCTTTAAGGAGCAATGATGTGAATGCCT
genomic: CAAACTAGCATCATTCAACCAGAATGCTTCTGgtgagcatag ... tctcatctagGTGCTGTCAAGGAAGCGATTGAATCTTTAAGGAGCAATGATGTGAATGCCT
taaattttaaatgtgatacactggaatttgttcttacaatgtatatctcatctagGTGCTGTCAAGGAAGCGATTGAATCTTTAAGGAGCAATGATGTGAATGCCTTTGTTTTGGACCTCCGAGATAATAG
ttcttac putative branch site (score: 2)
tctcatct putative PPT
tttaaatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttttcatttgctagaatgatatgttattcacattggatcttcttaaattttaaatgtgatacactggaatttgttcttacaatgtatatctcatctagGTGCTGTCAAGGAAGCGATTGAATCTTTAAGGAGCAATGATGTGAATGCCTTTGTTTTGGACCTCCGAGATAATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - catttgc
- - - - - - - -gaatgata
- - - - - - - - - - - - - tattcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cactgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caatgta