1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaatctctctctctccccccccctctctccctctctccctctctttttctcccccacccaatctaagcctgagttgttcctctttctctctctctctctccatctaatgtgagcctgagttgatatttttggagcttcttgacctgacaagcatgcttttttgcagTGCGGAGATTCTCATTGGAGGTGCCAAGGGCCCACCTGACAAG
species | Vitis vinifera |
transcript | Vv04s0008g00650.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTTATTGGAAGACGAGGAGCTTCCATTTTGTCAGTCAAGGAATCTTGCAA TGCGGAGATTCTCATTGGAGGTGCCAAGGGCCCACCTGACAAGEST: gi|156737847|gb|EV241968.1|EV241968
genomic: GTTATTGGAAGACGAGGAGCTTCCATTTTGTCAGTCAAGGAATCTTGCAAgtaatctctc ... ttttttgcagTGCGGAGATTCTCATTGGAGGTGCCAAGGGCCCACCTGACAAG
EST: GTTATTGGAAGACGAGGAGCTTCCATTTTGTCAGTCAAGGAATCTTGCAA TGCGGAGATTCTCATTGGAGGTGCCAAGGGCCCACCTGACAAGEST: gi|33409610|gb|CF215237.1|CF215237
genomic: GTTATTGGAAGACGAGGAGCTTCCATTTTGTCAGTCAAGGAATCTTGCAAgtaatctctc ... ttttttgcagTGCGGAGATTCTCATTGGAGGTGCCAAGGGCCCACCTGACAAG
EST: GTTATTGGAAGACGAGGAGCTTCCATTTTGTCAGTCAAGGAATCTTGCAA TGCGGAGATTCTCATTGGAGGTGCCAAGGGCCCACCTGACAAGEST: gi|110722833|gb|EE099455.1|EE099455
genomic: GTTATTGGAAGACGAGGAGCTTCCATTTTGTCAGTCAAGGAATCTTGCAAgtaatctctc ... ttttttgcagTGCGGAGATTCTCATTGGAGGTGCCAAGGGCCCACCTGACAAG
EST: GTTATTGGAAGACGAGGAGCTTCCATTTTGTCAGTCAAGGAATCTTGCAA TGCGGAGATTCTCATTGGAGGTGCCAAGGGCCCACCTGACAAGEST: gi|30129707|gb|CB915046.1|CB915046
genomic: GTTATTGGAAGACGAGGAGCTTCCATTTTGTCAGTCAAGGAATCTTGCAAgtaatctctc ... ttttttgcagTGCGGAGATTCTCATTGGAGGTGCCAAGGGCCCACCTGACAAG
EST: GTTATTGGAAGACGAGGAGCTTCCATTTTGTCAGTCAAGGAATCTTGCAA TGCGGAGATTCTCATTGGAGGTGCCAAGGGCCCACCTGACAAGEST: gi|110388273|gb|EC953007.1|EC953007
genomic: GTTATTGGAAGACGAGGAGCTTCCATTTTGTCAGTCAAGGAATCTTGCAAgtaatctctc ... ttttttgcagTGCGGAGATTCTCATTGGAGGTGCCAAGGGCCCACCTGACAAG
EST: GTTATTGGAAGACGAGGAGCTTCCATTTTGTCAGTCAAGGAATCTTGCAA TGCGGAGATTCTCATTGGAGGTGCCAAGGGCCCACCTGACAAGEST: gi|26267080|gb|CA818143.1|CA818143
genomic: GTTATTGGAAGACGAGGAGCTTCCATTTTGTCAGTCAAGGAATCTTGCAAgtaatctctc ... ttttttgcagTGCGGAGATTCTCATTGGAGGTGCCAAGGGCCCACCTGACAAG
EST: GTTATTGGAAGACGAGGAGCTTCCATTTTGTCAGTCAAGGAATCTTGCAA TGCGGAGATTCTCATTGGAGGTGCCAAGGGCCCACCTGACAAGEST: gi|71883347|gb|DT032402.1|DT032402
genomic: GTTATTGGAAGACGAGGAGCTTCCATTTTGTCAGTCAAGGAATCTTGCAAgtaatctctc ... ttttttgcagTGCGGAGATTCTCATTGGAGGTGCCAAGGGCCCACCTGACAAG
EST: GTTATTGGAAGACGAGGAGCTTCCATTTTGTCAGTCAAGGAATCTTGCAA TGCGGAGATTCTCATTGGAGGTGCCAAGGGCCCACCTGACAAGEST: gi|110365546|gb|EC928709.1|EC928709
genomic: GTTATTGGAAGACGAGGAGCTTCCATTTTGTCAGTCAAGGAATCTTGCAAgtaatctctc ... ttttttgcagTGCGGAGATTCTCATTGGAGGTGCCAAGGGCCCACCTGACAAG
EST: GTTATTGGAAGACGAGGAGCTTCCATTTTGTCAGTCAAGGAATCTTGCAA TGCGGAGATTCTCATTGGAGGTGCCAAGGGCCCACCTGACAAGEST: gi|110373103|gb|EC937314.1|EC937314
genomic: GTTATTGGAAGACGAGGAGCTTCCATTTTGTCAGTCAAGGAATCTTGCAAgtaatctctc ... ttttttgcagTGCGGAGATTCTCATTGGAGGTGCCAAGGGCCCACCTGACAAG
EST: GTTATTGGAAGACGAGGAGCTTCCATTTTGTCAGTCAAGGAATCTTGCAA TGCGGAGATTCTCATTGGAGGTGCCAAGGGCCCACCTGACAAGEST: gi|110416192|gb|EC982154.1|EC982154
genomic: GTTATTGGAAGACGAGGAGCTTCCATTTTGTCAGTCAAGGAATCTTGCAAgtaatctctc ... ttttttgcagTGCGGAGATTCTCATTGGAGGTGCCAAGGGCCCACCTGACAAG
EST: GTTATTGGAAGACGAGGAGCTTCCATTTTGTCAGTCAAGGAATCTTGCAA TGCGGAGATTCTCATTGGAGGTGCCAAGGGCCCACCTGACAAGEST: gi|26265140|gb|CA816203.1|CA816203
genomic: GTTATTGGAAGACGAGGAGCTTCCATTTTGTCAGTCAAGGAATCTTGCAAgtaatctctc ... ttttttgcagTGCGGAGATTCTCATTGGAGGTGCCAAGGGCCCACCTGACAAG
EST: GTTATTGGAAGACGAGGAGCTTCCATTTTGTCAGTCAAGGAATCTTGCAA TGCGGAGATTCTCATTGGAGGTGCCAAGGGCCCCCCTGACAAGEST: gi|110385784|gb|EC950339.1|EC950339
genomic: GTTATTGGAAGACGAGGAGCTTCCATTTTGTCAGTCAAGGAATCTTGCAAgtaatctctc ... ttttttgcagTGCGGAGATTCTCATTGGAGGTGCCAAGGGCCCACCTGACAAG
EST: GTTATTGGAAGACGAGGAGCTTCCATTTTGTCAGTCAAGGAATCTTGCAA TGCGGAGATTCTCATTGGAGGTGCCAAGGGCCCACCTGACAAGEST: gi|110723073|gb|EE099967.1|EE099967
genomic: GTTATTGGAAGACGAGGAGCTTCCATTTTGTCAGTCAAGGAATCTTGCAAgtaatctctc ... ttttttgcagTGCGGAGATTCTCATTGGAGGTGCCAAGGGCCCACCTGACAAG
EST: GTTATTGGAAGACGAGGAGCTTCCATTTTGTCAGTCAAGGAATCTTGCAA TGCGGAGATTCTCATTGGAGGTGCCAAGGGCCCACCTGACAAGEST: gi|30128917|gb|CB914256.1|CB914256
genomic: GTTATTGGAAGACGAGGAGCTTCCATTTTGTCAGTCAAGGAATCTTGCAAgtaatctctc ... ttttttgcagTGCGGAGATTCTCATTGGAGGTGCCAAGGGCCCACCTGACAAG
EST: GTTATTGGAAGACGAGGAGCTTCCATTTTGTCAGTCAAGGAATCTTGCAA TGCGGAGATTCTCATTGGAGGTGCCAAGGGCCCACCTGACAAGEST: gi|110367167|gb|EC931093.1|EC931093
genomic: GTTATTGGAAGACGAGGAGCTTCCATTTTGTCAGTCAAGGAATCTTGCAAgtaatctctc ... ttttttgcagTGCGGAGATTCTCATTGGAGGTGCCAAGGGCCCACCTGACAAG
EST: GTTATTGGAAGACGAGGAGCTTCCATTTTGTCAGTCAAGGAATCTTGCAA TGCGGAGATTCTCATTGGAGGTGCCAAGGGCCCACCTGACAAG
genomic: GTTATTGGAAGACGAGGAGCTTCCATTTTGTCAGTCAAGGAATCTTGCAAgtaatctctc ... ttttttgcagTGCGGAGATTCTCATTGGAGGTGCCAAGGGCCCACCTGACAAG
agcctgagttgatatttttggagcttcttgacctgacaagcatgcttttttgcagTGCGGAGATTCTCATTGGAGGTGCCAAGGGCCCACCTGACAAG
acctgac putative branch site (score: 3)
tgctttttt putative PPT
ttgatattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatctctctctctccccccccctctctccctctctccctctctttttctcccccacccaatctaagcctgagttgttcctctttctctctctctctctccatctaatgtgagcctgagttgatatttttggagcttcttgacctgacaagcatgcttttttgcagTGCGGAGATTCTCATTGGAGGTGCCAAGGGCCCACCTGACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG