1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tagtgctcctttttttgtgcttttaatatatttgcttttacctataaaaaaaactattcaattatacttacattgctaacacctttcctattcaatgcagGAACCATAACATGGTATCTAAGTGGGGATGCAATGAAGGGTGTTGAAGATGAACATTTTATCACTTTACACCATTCTGATTATTTTGAGCAATGAATTTT
species | Vitis vinifera |
transcript | Vv03s0038g01940.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AACAATCATACTGCATGCAACAAGGGAACAGGAACCAGCTACTGCATCAG GAACCATAACATGGTATCTAAGTGGGGATGCAATGAAGGGTGTTGAAGATGEST: gi|37189643|gb|CF608992.1|CF608992
genomic: AACAATCATACTGCATGCAACAAGGGAACAGGAACCAGCTACTGCATCAGgtacaaattg ... ttcaatgcagGAACCATAACATGGTATCTAAGTGGGGATGCAATGAAGGGTGTTGAAGATG
EST: AACAATCATACTGCATGCAACAAGGGAACAGGAACCAGCTACTGCATCAG GAACCATAACATGGTATCTAAGTGGGGATGCAATGAAGGGTGTTGAAGATG
genomic: AACAATCATACTGCATGCAACAAGGGAACAGGAACCAGCTACTGCATCAGgtacaaattg ... ttcaatgcagGAACCATAACATGGTATCTAAGTGGGGATGCAATGAAGGGTGTTGAAGATG
aaaaaaaactattcaattatacttacattgctaacacctttcctattcaatgcagGAACCATAACATGGTATCTAAGTGGGGATGCAATGAAGGGTGTTGAAGATGAACATTTTATCACTTTACACCATTCTGATTATTTTGAGCAATGAATTTT
tgctaac putative branch site (score: 1)
cacctttcctattc CT-rich tract
aaactattcaattata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagtgctcctttttttgtgcttttaatatatttgcttttacctataaaaaaaactattcaattatacttacattgctaacacctttcctattcaatgcagGAACCATAACATGGTATCTAAGTGGGGATGCAATGAAGGGTGTTGAAGATGAACATTTTATCACTTTACACCATTCTGATTATTTTGAGCAATGAATTTT
- -tgctcct
- - - - - - -tttgtgc
- - - - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - -ctattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cattgct