1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tggattcacatggtattttatactctgtcttgcaattgcattcatactggtatattgatctgcctcttagtaatgtactgaagttcattgtgaattacagTTGGCATACATGTTCTGGGTTCAGGGCTATAAACTTAATGAAGCTCACAGTTTACTTATG
species | Vitis vinifera |
transcript | Vv00s0250g00020.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGACTTATATACACTGCACAGCTGGACTTGGGAGAGCTCCTGCCGTGGCG TTGGCATACATGTTCTGGGTTCAGGGCTATAAACTTAATGAAGCTCACAGTEST: gi|30252735|gb|CB970286.1|CB970286
genomic: TGACTTATATACACTGCACAGCTGGACTTGGGAGAGCTCCTGCCGTGGCGgtatgcttct ... tgaattacagTTGGCATACATGTTCTGGGTTCAGGGCTATAAACTTAATGAAGCTCACAGT
EST: TGACTTATATACACTGCACAGCTGGACTTGGGAGAGCTCCTGCCGTGGCG TTGGCATACATGTTCTGGGTTCAGGGCTATAAACTTAATGAAGCTCACAGTEST: gi|110731715|gb|EE106367.1|EE106367
genomic: TGACTTATATACACTGCACAGCTGGACTTGGGAGAGCTCCTGCCGTGGCGgtatgcttct ... tgaattacagTTGGCATACATGTTCTGGGTTCAGGGCTATAAACTTAATGAAGCTCACAGT
EST: TGACTTATATACACTGCACAGCTGGACTTGGGAGAGCTCCTGCTGTGGCG TTGGCATACATGTTCTGGGTTCAGGGCCTA-AAACTTAATGAAGCTCACAGEST: gi|110725728|gb|EE102561.1|EE102561
genomic: TGACTTATATACACTGCACAGCTGGACTTGGGAGAGCTCCTGCCGTGGCGgtatgcttct ... tgaattacagTTGGCATACATGTTCTGGGTTCAGGGC-TATAAACTTAATGAAGCTCACAG
EST: GACTTATATACACTGCACAGCTGGGACT-GGGAGAGCTCCTGCTGTGGCG TTGGCATACATGTTCTGGGTTCAGGGCTATAAACTTAATGAAGCTCACAGTEST: gi|110390476|gb|EC955386.1|EC955386
genomic: GACTTATATACACTGCACAGCTGG-ACTTGGGAGAGCTCCTGCCGTGGCGgtatgcttct ... tgaattacagTTGGCATACATGTTCTGGGTTCAGGGCTATAAACTTAATGAAGCTCACAGT
EST: TGACTTATATACACTGCACAGCTGGACTTGGGAGAGCTCCTGCCGTGGCG TTGGCATACATGTTCTGGGTTCAGGGCTATAAACTTAATGAAGCTCACAGTEST: gi|27582920|gb|CB005615.1|CB005615
genomic: TGACTTATATACACTGCACAGCTGGACTTGGGAGAGCTCCTGCCGTGGCGgtatgcttct ... tgaattacagTTGGCATACATGTTCTGGGTTCAGGGCTATAAACTTAATGAAGCTCACAGT
EST: TGACTTATATACACTGCACAGCTGGACTTGGGAGAGCTCCTGCTGTGGCG TTGGCATACATGTTCTGGGTTCAGGGCTATAAACTTAATGAAGCTCACAGTEST: gi|110719002|gb|EE096483.1|EE096483
genomic: TGACTTATATACACTGCACAGCTGGACTTGGGAGAGCTCCTGCCGTGGCGgtatgcttct ... tgaattacagTTGGCATACATGTTCTGGGTTCAGGGCTATAAACTTAATGAAGCTCACAGT
EST: TGACTTATATACACTGCACAGCTGGACTTGGGAGAGCTCCTGCCGTGGCG TTGGCATACATGTTCTGGGTTCAGGGCTATAAACTTAATGAAGCTCACAGTEST: gi|110723499|gb|EE100881.1|EE100881
genomic: TGACTTATATACACTGCACAGCTGGACTTGGGAGAGCTCCTGCCGTGGCGgtatgcttct ... tgaattacagTTGGCATACATGTTCTGGGTTCAGGGCTATAAACTTAATGAAGCTCACAGT
EST: TGACTTATATACACTGCACAGCTGGACTTGGGAGAGCTCCTGCTGTGGCG TTGGCATACATGTTCTGGGTTCAAGGCTATAAACTTAATGAAGCTCACAGT
genomic: TGACTTATATACACTGCACAGCTGGACTTGGGAGAGCTCCTGCCGTGGCGgtatgcttct ... tgaattacagTTGGCATACATGTTCTGGGTTCAGGGCTATAAACTTAATGAAGCTCACAGT
actggtatattgatctgcctcttagtaatgtactgaagttcattgtgaattacagTTGGCATACATGTTCTGGGTTCAGGGCTATAAACTTAATGAAGCTCACAGTTTACTTATG
tattgat putative branch site (score: 3)
tatattgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggattcacatggtattttatactctgtcttgcaattgcattcatactggtatattgatctgcctcttagtaatgtactgaagttcattgtgaattacagTTGGCATACATGTTCTGGGTTCAGGGCTATAAACTTAATGAAGCTCACAGTTTACTTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - -tcacatg
- - - - - - - - - - - - -tgtcttg
- - - - - - - - - - - - - - - - - - -gcattca