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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgcaacttggactgtaaaggtggaccttccaaatattttttctctctgtttttctaaatctcatttacaattttagGAGCCATGGCTGCTTCATGAATTTGATGAGGATTTCTATGGCGAGGAATTACATCTTGTCATTGTTGGCTATATACGACCTGAG

Basic information

species Vitis vinifera
transcript Vv00s0181g00130.t01
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|122688581|gb|EC921621.1|EC921621
EST:     TGATGAGCATTGGCTGGAATCCATATTTCAACAACACTGAGAAAACTATA                         GAGCCATGGCTGCTTCACGAATTTGATGAGGATTTCTATGGCGAGGAATTA
genomic: TGATGAGCATTGGCTGGAATCCATATTTCAACAACACCGAGAAAACTATAgtgagtgcaa ... acaattttagGAGCCATGGCTGCTTCATGAATTTGATGAGGATTTCTATGGCGAGGAATTA
EST: gi|122688643|gb|EC920309.1|EC920309
EST:     TGATGAGCATTGGCTGGAATCCATATTTCAACAACACTGAGAAAACTATA                         GAGCCATGGCTGCTTCACGAATTTGATGAGGATTTCTATGGCGAGGAATTA
genomic: TGATGAGCATTGGCTGGAATCCATATTTCAACAACACCGAGAAAACTATAgtgagtgcaa ... acaattttagGAGCCATGGCTGCTTCATGAATTTGATGAGGATTTCTATGGCGAGGAATTA
EST: gi|122688583|gb|EC921683.1|EC921683
EST:     TGATGAGCATTGGCTGGAATCCATATTTCAACAACACTGAGAAAACTATA                         GAGCCATGGCTGCTTCACGAATTTGATGAGGATTTCTATGGCGAGGAATTA
genomic: TGATGAGCATTGGCTGGAATCCATATTTCAACAACACCGAGAAAACTATAgtgagtgcaa ... acaattttagGAGCCATGGCTGCTTCATGAATTTGATGAGGATTTCTATGGCGAGGAATTA
EST: gi|122688609|gb|EC923003.1|EC923003
EST:     TGATGAGCATTGGCTGGAATCCATATTTCAACAACACTGAGAAAACTATA                         GAGCCATGGCTGCTTCACGAATTTGATGAGGATTTCTATGGCGAGGAATTA
genomic: TGATGAGCATTGGCTGGAATCCATATTTCAACAACACCGAGAAAACTATAgtgagtgcaa ... acaattttagGAGCCATGGCTGCTTCATGAATTTGATGAGGATTTCTATGGCGAGGAATTA
EST: gi|122688550|gb|EC920300.1|EC920300
EST:     TGATGAGCATTGGCTGGAATCCATATTTCAACAACACTGAGAAAACTATA                         GAGCCATGGCTGCTTCACGAATTTGATGAGGATTTCTATGGCGAGGAATTA
genomic: TGATGAGCATTGGCTGGAATCCATATTTCAACAACACCGAGAAAACTATAgtgagtgcaa ... acaattttagGAGCCATGGCTGCTTCATGAATTTGATGAGGATTTCTATGGCGAGGAATTA
EST: gi|122688646|gb|EC920398.1|EC920398
EST:     TGATGAGCATTGGCTGGAATCCATATTTCAACAACACTGAGAAAACTATA                         GAGCCATGGCTGCTTCACGAATTTGATGAGGATTTCTATGGCGAGGAATTA
genomic: TGATGAGCATTGGCTGGAATCCATATTTCAACAACACCGAGAAAACTATAgtgagtgcaa ... acaattttagGAGCCATGGCTGCTTCATGAATTTGATGAGGATTTCTATGGCGAGGAATTA
EST: gi|122688569|gb|EC921114.1|EC921114
EST:     TGATGAGCATTGGCTGGAATCCATATTTCAACAACACTGAGAAAACTATA                         GAGCCATGGCTGCTTCACGAATTTGATGAGGATTTCTATGGCGAGGAATTA
genomic: TGATGAGCATTGGCTGGAATCCATATTTCAACAACACCGAGAAAACTATAgtgagtgcaa ... acaattttagGAGCCATGGCTGCTTCATGAATTTGATGAGGATTTCTATGGCGAGGAATTA
EST: gi|122688616|gb|EC923325.1|EC923325
EST:     TGATGAGCATTGGCTGGAATCCATATTTCAACAACACTGAGAAAACTATA                         GAGCCATGGCTGCTTCACGAATTTGATGAGGATTTCTATGGCGAGGAATTA
genomic: TGATGAGCATTGGCTGGAATCCATATTTCAACAACACCGAGAAAACTATAgtgagtgcaa ... acaattttagGAGCCATGGCTGCTTCATGAATTTGATGAGGATTTCTATGGCGAGGAATTA
EST: gi|122688561|gb|EC920714.1|EC920714
EST:     TGATGAGCATTGGCTGGAATCCATATTTCAACAACACTGAGAAAACTATA                         GAGCCATGGCTGCTTCACGAATTTGATGAGGATTTCTATGGCGAGGAATTA
genomic: TGATGAGCATTGGCTGGAATCCATATTTCAACAACACCGAGAAAACTATAgtgagtgcaa ... acaattttagGAGCCATGGCTGCTTCATGAATTTGATGAGGATTTCTATGGCGAGGAATTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggaccttccaaatattttttctctctgtttttctaaatctcatttacaattttagGAGCCATGGCTGCTTCATGAATTTGATGAGGATTTCTATGGCGAGGAATTACATCTTGTCATTGTTGGCTATATACGACCTGAG
                              ttctaaa  putative branch site (score: 2)
                           tttttctaaatctcat  TA-rich tract