Sequence
atgc intronic sequence ATGC exonic sequencegttaagttctcaaaccagtttgaatgttttttttcccttttaaatcatcttagcattagttgaagattcagctgttattagtttctgttataacctgtatttgttcgggaattgctggttgtgtctaaatgtacatcatctctgcagCCCAATATGCTGGTTGTTGATGTAGAGAAATTTGTTTCACCAAATAAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0138g00140.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA15G39380.1 (Glycine max), 3'ss of exon 7
gttaagttctcaaaccagtttgaatgttttttttcccttttaaatcatcttagcattagttgaagattcagctgttattagtttctgttataacctgtatttgttcgggaattgctggttgtgtctaaatgtacatcatctctgcagCCCAATATGCTGGTTGTTGATGTAGAGAAATTTGTTTCACCAAATAAAG
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-----------------------------------------------------------------------------------actgttgtagcct-------tttaattattttc--ctatatttacatgtttggaatttttgcagcccaatatgctggttgttgatgttgagaaatttgtttcaccacagCAAG
upper sequence: Vv19s0138g00140.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA13G33580.1 (Glycine max), 3'ss of exon 7
gttaagttctcaaaccagtttgaatgttttttttcccttttaaatcatcttagcattagttgaagattcagctgttattagtttctgttataacctgtatttgttcgggaattgctggttgtgtctaaatgtacatcatctctgcagCCCAATATGCTGGTTGTTGATGTAGAGAAATTTGTTTCACCAAATAAAG
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-------------------------------------tgttagaaaacattttcatcttttagttgttt--ctgctgttagaaactgttgtagccttt-ttaatt---atattccta----tatttgcatgtttggaatttttgcagCCCAACATGCTGGTTGTTGATGTTGAGAAATTTGTTTCACCACAACAAG
upper sequence: Vv19s0138g00140.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA19G22500.1 (Glycine max), 3'ss of exon 6
gttaagttctcaaaccagtttgaatgttttttttcccttttaaatcatcttagcattagttgaagattcagctgttattagtttctgttataacctgtatttgttcgggaattgctggttgtgtctaaatgtacatcatctctgcagCCCAATATGCTGGTTGTTGATGTAGAGAAATTTGTTTCACCAAATAAAG
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-----------gtagccttttaattattttcctatatttatgtgt----ttggaatttttccaag-
upper sequence: Vv19s0138g00140.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT3G14590.1 (Arabidopsis thaliana), 3'ss of exon 6
gttaagttctcaaaccagtttgaatgttttttttcccttttaaatcatcttagcattagttgaagattcagctgttattagtttctgttataacctgtatttgttcgggaattgctggttgtgtctaaatgtacatcatctctgcagCCCAATATGCTGGTTGTTGATGTAGAGAAATTTGTTTCACCAAATAAAG---
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gtaagattcttg-------ttgtttgtcgcctttctcttc-ggatgctct--ggattaatcccctctgtagttaagcaaacactgcattacaattactctagctacatgaa-----gcttgtgtctaa-----------ttttgcagCCAAATATGCTGGTAGTTGATATGGAGAAATTTGTTAGCCCAGAGTCAGGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acctgtatttgttcgggaattgctggttgtgtctaaatgtacatcatctctgcagCCCAATATGCTGGTTGTTGATGTAGAGAAATTTGTTTCACCAAATAAAG
tcatctct CT-rich tract
tatttgtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttaagttctcaaaccagtttgaatgttttttttcccttttaaatcatcttagcattagttgaagattcagctgttattagtttctgttataacctgtatttgttcgggaattgctggttgtgtctaaatgtacatcatctctgcagCCCAATATGCTGGTTGTTGATGTAGAGAAATTTGTTTCACCAAATAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG