1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgcattagcttttaccattatttacctgtttgggttttacttctgttggtagtggcagtgtctcattttctgttcattctggctgtaataacattttcagACACGGAGGACAAAGCAACCACTGAGCCTTCAGCAAAGAAAAGCAAGAAAAAGAAGTCTAAAGTCGAGGCTGCAGAGGATGGTGAGCCCATGGTTGAGGA
species | Vitis vinifera |
transcript | Vv17s0000g01720.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GAAAAACATTGATGTTATGAAAGCTGCCATTGAAATTACTCAAAACAATG ACACGGAGGACAAAGCAACCACTGAGCCTTCA
genomic: GAAAAACATTGATGTTATGAAAGCTGCCATTGAAATTACTCAAAACAATGgtgagctata ... acattttcagACACGGAGGACAAAGCAACCACTGAGCCTTCA
ttggtagtggcagtgtctcattttctgttcattctggctgtaataacattttcagACACGGAGGACAAAGCAACCACTGAGCCTTCAGCAAAGAAAAGCAAGAAAAAGAAGTCTAAAGTCGAGGCTGCAGAGGATGGTGAGCCCATGGTTGAGGA
taataac putative branch site (score: 1)
cattttc CT-rich tract
tgtaataacatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcattagcttttaccattatttacctgtttgggttttacttctgttggtagtggcagtgtctcattttctgttcattctggctgtaataacattttcagACACGGAGGACAAAGCAACCACTGAGCCTTCAGCAAAGAAAAGCAAGAAAAAGAAGTCTAAAGTCGAGGCTGCAGAGGATGGTGAGCCCATGGTTGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - taccatt
- - - - - - - - - - - - - tgtttgg
- - - - - - - - - - - - - - - - - - - -cttctgt
- - - - - - - - - - - - - - - - - - - - - - - -ggtagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggctgt