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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatgggttttgcatgtgcatctatctcatgatttttcatattgttgaaagattcatattgtgcttcctctactttgcagGATCTTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTTTCT

Basic information

species Vitis vinifera
transcript Vv15s0045g00310.t01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110697700|gb|EE074917.1|EE074917
EST:     TGACTTCTTTGCCTGATTTTAAGTCTGCCTTTCCTAAGTGGCCTCCTAAG                         GATCTTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTT
genomic: TGACTTCTTTGCCTGATTTTAAGTCTGCCTTTCCTAAGTGGCCTCCTAAGgtaaatgggt ... tactttgcagGATCTTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTT
EST: gi|22013045|gb|BQ798079.1|BQ798079
EST:     TGACTTCTTTGCCTGATTTTAAGTCTGCCTTTCCTAAGTGGCCTCCTAAG                         GATCTTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTT
genomic: TGACTTCTTTGCCTGATTTTAAGTCTGCCTTTCCTAAGTGGCCTCCTAAGgtaaatgggt ... tactttgcagGATCTTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTT
EST: gi|110376567|gb|EC941627.1|EC941627
EST:     TGACTTCTTTGCCTGATTTTAAGTCTGCCTTTCCTAAGTGGCCTCCTAAG                         GATCTTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTT
genomic: TGACTTCTTTGCCTGATTTTAAGTCTGCCTTTCCTAAGTGGCCTCCTAAGgtaaatgggt ... tactttgcagGATCTTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTT
EST: gi|110360550|gb|EC923749.1|EC923749
EST:     TGACTTCTTTGCCTGATTTTAAGTCTGCCTTTCCTAAGTGGCCTCCTAAG                         GATCTTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTT
genomic: TGACTTCTTTGCCTGATTTTAAGTCTGCCTTTCCTAAGTGGCCTCCTAAGgtaaatgggt ... tactttgcagGATCTTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTT
EST: gi|71889466|gb|DT038521.1|DT038521
EST:     TGACTTCTTTGCCTGATTTTAAGTCTGCCTTTCCTAAGTGGCCTCCTAAG                         GATCTTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTT
genomic: TGACTTCTTTGCCTGATTTTAAGTCTGCCTTTCCTAAGTGGCCTCCTAAGgtaaatgggt ... tactttgcagGATCTTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTT
EST: gi|22011236|gb|BQ796270.1|BQ796270
EST:     TGACTTCTTTGCCTGATTTTAAGTCTGCCTTTCCTAAGTGGCCTCCTAAG                         GATCTTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTT
genomic: TGACTTCTTTGCCTGATTTTAAGTCTGCCTTTCCTAAGTGGCCTCCTAAGgtaaatgggt ... tactttgcagGATCTTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTT
EST: gi|110422498|gb|EC988823.1|EC988823
EST:     TGACTTCTTTGCCTGATTTTAAGTCTGCCTTTCCTAAGTGGCCTCCTAAG                         GATCTTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTT
genomic: TGACTTCTTTGCCTGATTTTAAGTCTGCCTTTCCTAAGTGGCCTCCTAAGgtaaatgggt ... tactttgcagGATCTTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTT
EST: gi|110427638|gb|EC994087.1|EC994087
EST:     TGACTTCTTTGCCTGATTTTAAGTCTGCCTTTCCTAAGTGGCCTCCTAAG                         GATCTTGCAACTGTTGTCCCAAATCTTGAATCAGCTGGCATTGATCTCCTT
genomic: TGACTTCTTTGCCTGATTTTAAGTCTGCCTTTCCTAAGTGGCCTCCTAAGgtaaatgggt ... tactttgcagGATCTTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTT
EST: gi|28967267|gb|CB346300.1|CB346300
EST:     TGACTTCTTTGCCTGATTTTAAGTCTGCCTTTCCTAAGTGGCCTCCTAAG                         GATCTTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTT
genomic: TGACTTCTTTGCCTGATTTTAAGTCTGCCTTTCCTAAGTGGCCTCCTAAGgtaaatgggt ... tactttgcagGATCTTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcatgatttttcatattgttgaaagattcatattgtgcttcctctactttgcagGATCTTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTTTCT
                                    tgcttcctctacttt  CT-rich tract
 atttttcatattgtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaatgggttttgcatgtgcatctatctcatgatttttcatattgttgaaagattcatattgtgcttcctctactttgcagGATCTTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTTTCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG