1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...taaacccatgaagccttggtttccacaattttctaaaagttaatgacttctgaaattcattcatatataaattaattgtgcattttatttggctttccagGTTGTAGATGCAGTACAAGCAGTAAAAACAACCAATGCACGGGGTGAAGTTAAATACCCAATTAAG
species | Vitis vinifera |
transcript | Vv15s0021g02230.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCATGTCCTCAAAGTTGATAGCTGGTGACAGTGACTTCTTCGCAGGTTTG GTTGTAGATGCAGTACAAGCAGTAAAAACAACCAATGCACGGGGTGAAGTTEST: gi|349825285|gb|FQ418006.1|FQ418006
genomic: GCATGTCCTCAAAGTTGATAGCTGGTGACAGTGACTTCTTCGCAAGTTTGgtatgtgttc ... ggctttccagGTTGTAGATGCAGTACAAGCAGTAAAAACAACCAATGCACGGGGTGAAGTT
EST: GCATGTCCTCAAAGTTGATAGCTGGTGACAGTGACTTCTTCGCAAGTTTG GTTGTAGACGCAGTACAAGCAGTAAAAACAACCAATGCACGGGGTGAAGTTEST: gi|110691850|gb|EE070424.1|EE070424
genomic: GCATGTCCTCAAAGTTGATAGCTGGTGACAGTGACTTCTTCGCAAGTTTGgtatgtgttc ... ggctttccagGTTGTAGATGCAGTACAAGCAGTAAAAACAACCAATGCACGGGGTGAAGTT
EST: GCATGTCCTCAAAGTTGATAGCTGGTGACAGTGACTTCTTCGCAAGTTTG GTTGTAGATGCAGTACAAGCAGTAAAAACAACCAATGCACGGGGTGAAGTTEST: gi|71882935|gb|DT031990.1|DT031990
genomic: GCATGTCCTCAAAGTTGATAGCTGGTGACAGTGACTTCTTCGCAAGTTTGgtatgtgttc ... ggctttccagGTTGTAGATGCAGTACAAGCAGTAAAAACAACCAATGCACGGGGTGAAGTT
EST: GCATGTCCTCAAAGTTGATAGCTGGTGACAGTGACTTCTTCGCAAGTTTG GTTGTAGATGCAGTACAAGCAGTAAAAACAACCAATGCACGGGGTGAAGTTEST: gi|30322269|gb|CD005531.1|CD005531
genomic: GCATGTCCTCAAAGTTGATAGCTGGTGACAGTGACTTCTTCGCAAGTTTGgtatgtgttc ... ggctttccagGTTGTAGATGCAGTACAAGCAGTAAAAACAACCAATGCACGGGGTGAAGTT
EST: GTGACTTCTTCGCAAGTTTG GTTGTAGATGCAGTACAAGCAGTAAAAACAACCAATGCACGGGGTGAAGTTEST: gi|351026648|gb|FQ436301.1|FQ436301
genomic: GTGACTTCTTCGCAAGTTTGgtatgtgttc ... ggctttccagGTTGTAGATGCAGTACAAGCAGTAAAAACAACCAATGCACGGGGTGAAGTT
EST: GCATGTCCTCAAAGTTGATAGCTGGTGACAGTGACTTCTTCGCAAGTTTG GTTGTAGATGCAGTACAAGCAGTAAAAACAACCAATGCACGGGGTGAAGTT
genomic: GCATGTCCTCAAAGTTGATAGCTGGTGACAGTGACTTCTTCGCAAGTTTGgtatgtgttc ... ggctttccagGTTGTAGATGCAGTACAAGCAGTAAAAACAACCAATGCACGGGGTGAAGTT
acttctgaaattcattcatatataaattaattgtgcattttatttggctttccagGTTGTAGATGCAGTACAAGCAGTAAAAACAACCAATGCACGGGGTGAAGTTAAATACCCAATTAAG
aattaat putative branch site (score: 3)
ctttcc putative PPT
aaattcattcatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaacccatgaagccttggtttccacaattttctaaaagttaatgacttctgaaattcattcatatataaattaattgtgcattttatttggctttccagGTTGTAGATGCAGTACAAGCAGTAAAAACAACCAATGCACGGGGTGAAGTTAAATACCCAATTAAG
-aaaccca
- - - - tgaagcc
- - - - - - - - - - -tccacaa
- - - - - - - - - - - - - - - - ctaaaag
- - - - - - - - - - - - - - - - - - - - - - - cttctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -cattcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaattaa