1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gatattttttatttcatgagtgaagcatacttgatctcttattgacttctcattctttattgatctattttgtttgtaacacttgttctatttgtttcagTCCCCTGAAGATTGTGCAATTTCCATTGCCAACATCATCCGACACCATGAGACAGAGTACCTGACATCTCTTCAG
species | Vitis vinifera |
transcript | Vv14s0060g02220.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATGTGCAGTTAGATGCAAAACATGAATGCAAGGATTCAACAATATTTCAG TCCCCTGAAGATTGTGCAATTTCCATTGCCAACATCATCCGACACCATGAGEST: gi|30303522|gb|CB980316.1|CB980316
genomic: ATGTGCAGTTAGATGCAAAACATGAATGCAAGGATTCAACAATATTTCAGgttattattt ... tttgtttcagTCCCCTGAAGATTGTGCAATTTCCATTGCCAACATCATCCGACACCATGAG
EST: ATGTGCAGTTAGATGCAAAACATGAATGCAAGGATTCAACAATATTTCAG TCCCCTGAAGATTGTGCAATTTCCATTGCCAACATCATCCGACACCATGAGEST: gi|110384527|gb|EC948970.1|EC948970
genomic: ATGTGCAGTTAGATGCAAAACATGAATGCAAGGATTCAACAATATTTCAGgttattattt ... tttgtttcagTCCCCTGAAGATTGTGCAATTTCCATTGCCAACATCATCCGACACCATGAG
EST: ATGTGCAGTTAGATGCAAAACATGAATGCAAGGATTCAACAATATTTCAG TCCCCTGAAGATTGTGCAATTTCCATTGCCAACATCATCCGACACCATGAGEST: gi|77585681|gb|DV221932.1|DV221932
genomic: ATGTGCAGTTAGATGCAAAACATGAATGCAAGGATTCAACAATATTTCAGgttattattt ... tttgtttcagTCCCCTGAAGATTGTGCAATTTCCATTGCCAACATCATCCGACACCATGAG
EST: ATGTGCAGTTAGATGCAAAACATGAATGCAAGGATTCAACAATATTTCAG TCCCCTGAAGATTGTGCAATTTCCATTGCCAACATCATCCGACACCATGAGEST: gi|30329044|gb|CD012306.1|CD012306
genomic: ATGTGCAGTTAGATGCAAAACATGAATGCAAGGATTCAACAATATTTCAGgttattattt ... tttgtttcagTCCCCTGAAGATTGTGCAATTTCCATTGCCAACATCATCCGACACCATGAG
EST: ATGTGCAGTTAGATGCAAAACATGAATGCAAGGATTCAACAATATTTCAG TCCCCTGAAGATTGTGCAATTTCCATTGCCAACATCATCCGACACCATGAGEST: gi|30133940|gb|CB919279.1|CB919279
genomic: ATGTGCAGTTAGATGCAAAACATGAATGCAAGGATTCAACAATATTTCAGgttattattt ... tttgtttcagTCCCCTGAAGATTGTGCAATTTCCATTGCCAACATCATCCGACACCATGAG
EST: ATGTGCAGTTAGATGCAAAACATGAATGCAAGGATTCAACAATATTTCAG TCCCCTGAAGATTGTGCAATTTCCATTGCCAACATCATCCGACACCATGAGEST: gi|110386543|gb|EC951144.1|EC951144
genomic: ATGTGCAGTTAGATGCAAAACATGAATGCAAGGATTCAACAATATTTCAGgttattattt ... tttgtttcagTCCCCTGAAGATTGTGCAATTTCCATTGCCAACATCATCCGACACCATGAG
EST: ATGTGCAGTTAGATGCAAAACATGAATGCAAGGATTCAACAATATTTCAG TCCCCTGAAGATTGTGCAATTTCCATTGCCAACATCATCCGACACCATGAGEST: gi|71868070|gb|DT017125.1|DT017125
genomic: ATGTGCAGTTAGATGCAAAACATGAATGCAAGGATTCAACAATATTTCAGgttattattt ... tttgtttcagTCCCCTGAAGATTGTGCAATTTCCATTGCCAACATCATCCGACACCATGAG
EST: ATGTGCAGTTAGATGCAAAACATGAATGCAAGGATTCAACAATATTTCAG TCCCCTGAAGATTGTGCAATTTCCATTGCCAACATCATCCGACACCATGAGEST: gi|110368925|gb|EC933063.1|EC933063
genomic: ATGTGCAGTTAGATGCAAAACATGAATGCAAGGATTCAACAATATTTCAGgttattattt ... tttgtttcagTCCCCTGAAGATTGTGCAATTTCCATTGCCAACATCATCCGACACCATGAG
EST: GTTAGATGCAAAACATGAATGCAAGGATTCAACAATATTTCAG TCCCCTGAAGATTGTGCAATTTCCATTGCCAACATCATCCGACACCATGAGEST: gi|56408576|gb|CX016828.1|CX016828
genomic: GTTAGATGCAAAACATGAATGCAAGGATTCAACAATATTTCAGgttattattt ... tttgtttcagTCCCCTGAAGATTGTGCAATTTCCATTGCCAACATCATCCGACACCATGAG
EST: ATGTGCAGTTAGATGCAAAACATGAATGCAAGGATTCAACAATATTTCAG TCCCCTGAAGATTGTGCAATTTCCATTGCCAACATCATCCGACACCATGAGEST: gi|77579507|gb|DV218595.1|DV218595
genomic: ATGTGCAGTTAGATGCAAAACATGAATGCAAGGATTCAACAATATTTCAGgttattattt ... tttgtttcagTCCCCTGAAGATTGTGCAATTTCCATTGCCAACATCATCCGACACCATGAG
EST: ATGTGCAGTTAGATGCAAAACATGAATGCAAGGATTCAACAATATTTCAG TCCCCTGAAGATTGTGCAATTTCCATTGCCAACATCATCCGACACCATGAGEST: gi|56408380|gb|CX016632.1|CX016632
genomic: ATGTGCAGTTAGATGCAAAACATGAATGCAAGGATTCAACAATATTTCAGgttattattt ... tttgtttcagTCCCCTGAAGATTGTGCAATTTCCATTGCCAACATCATCCGACACCATGAG
EST: ATGTGCAGTTAGATGCAAAACATGAATGCAAGGATTCAACAATATTTCAG TCCCCTGAAGATTGTGCAATTTCCATTGCCAACATCATCCGACACCATGAGEST: gi|27582331|gb|CB005026.1|CB005026
genomic: ATGTGCAGTTAGATGCAAAACATGAATGCAAGGATTCAACAATATTTCAGgttattattt ... tttgtttcagTCCCCTGAAGATTGTGCAATTTCCATTGCCAACATCATCCGACACCATGAG
EST: ATGTGCAGTTAGATGCAAAACATGAATGCAAGGATTCAACAATATTTCAG TCCCCTGAAGATTGTGCAATTTCCATTGCCAACATCATCCGACACCATGAG
genomic: ATGTGCAGTTAGATGCAAAACATGAATGCAAGGATTCAACAATATTTCAGgttattattt ... tttgtttcagTCCCCTGAAGATTGTGCAATTTCCATTGCCAACATCATCCGACACCATGAG
cttctcattctttattgatctattttgtttgtaacacttgttctatttgtttcagTCCCCTGAAGATTGTGCAATTTCCATTGCCAACATCATCCGACACCATGAGACAGAGTACCTGACATCTCTTCAG
ttgtaac putative branch site (score: 2)
ttctattt putative PPT
tttattgatctatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatattttttatttcatgagtgaagcatacttgatctcttattgacttctcattctttattgatctattttgtttgtaacacttgttctatttgtttcagTCCCCTGAAGATTGTGCAATTTCCATTGCCAACATCATCCGACACCATGAGACAGAGTACCTGACATCTCTTCAG
- - - - - - - catgagt
- - - - - - - - - - - - gcatact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacttgt