1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...agactaacacttctttcctccatttcacttattttctcagcagttttgaattcttgacatgcaaaggatcttctgacacagtctaccttatttaactcagGTTGGCCAGGGAGGCAGGTCTTGAGTATGTGGAAATTCAGAACCTGACTGACTTTTATGATGATAACAG
species | Vitis vinifera |
transcript | Vv13s0074g00190.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GATACTTCTGCCGAAACTTATTGCCTGGTTCACTTCCCAAGCTTGATCAG GTTGGCCAGGGAGGCAGGTCTTGAGTATGTGGAAATTCAGAACCTGACTGAEST: gi|30126088|gb|CB911427.1|CB911427
genomic: GATACTTCTGCCGAAACTTATTGCCTGGTTCACTTCCCAAGCTTGATCAGgttgttcttc ... tttaactcagGTTGGCCAGGGAGGCAGGTCTTGAGTATGTGGAAATTCAGAACCTGACTGA
EST: GATACTTCTGCCGAAACTTATTGCCTGGTTCACTTCCCAAGCTTGATCAG GTTGGCCAGGGAGGCAGGTCTTGAGTATGTGGAAATTCAGAACCTGACTGAEST: gi|110722057|gb|EE097952.1|EE097952
genomic: GATACTTCTGCCGAAACTTATTGCCTGGTTCACTTCCCAAGCTTGATCAGgttgttcttc ... tttaactcagGTTGGCCAGGGAGGCAGGTCTTGAGTATGTGGAAATTCAGAACCTGACTGA
EST: GATACTTCTGCCGAAACTTATTGCCTGGTTCACTTCCCAAGCTTGATCAG GTTGGCCAGGGGAGGCAG-TCTTGAATATGTGGAAATTCAGAACCTGACTGEST: gi|110703995|gb|EE081418.1|EE081418
genomic: GATACTTCTGCCGAAACTTATTGCCTGGTTCACTTCCCAAGCTTGATCAGgttgttcttc ... tttaactcagGTTGGCCAGGG-AGGCAGGTCTTGAGTATGTGGAAATTCAGAACCTGACTG
EST: GATACTTCTGCCGAAACTTATTGCCTGGTTCACTTCCCAAGCTTGATCAG GTTGGCCAGAGGAG-CAAGTCTTGAGTATGTGGAAATTCAGAACCTGACTG
genomic: GATACTTCTGCCGAAACTTATTGCCTGGTTCACTTCCCAAGCTTGATCAGgttgttcttc ... tttaactcagGTTGGCCAG-GGAGGCAGGTCTTGAGTATGTGGAAATTCAGAACCTGACTG
ttgaattcttgacatgcaaaggatcttctgacacagtctaccttatttaactcagGTTGGCCAGGGAGGCAGGTCTTGAGTATGTGGAAATTCAGAACCTGACTGACTTTTATGATGATAACAG
ccttattt CT-rich tract
ttatttaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agactaacacttctttcctccatttcacttattttctcagcagttttgaattcttgacatgcaaaggatcttctgacacagtctaccttatttaactcagGTTGGCCAGGGAGGCAGGTCTTGAGTATGTGGAAATTCAGAACCTGACTGACTTTTATGATGATAACAG
- -ctaacac
- - - - - - - -tcctcca
- - - - - - - - - - - - - - - - - -ctcagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - acatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgacac