1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagattcctctgcttgatttgatcttacagtcaactctaatcacaaattatttttacactagtattatatctgcatgcagCGCCTTTCAGTGATGGAGTTCCTGAACAAGCAGATAGCAGAAAAGACAACCTGATTCAGCTCTCTGAGGTCAG
species | Vitis vinifera |
transcript | Vv13s0047g00170.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGTTGGAATCTNTGACATTAAGTTCTGAAGAAGCTGGTCTTGAGCAACGG CGCCTTTCAGTGATGGAGTTCCTGAACAAGCAGATAGCAGAAAAGACAACCEST: gi|352777130|gb|FQ474437.1|FQ474437
genomic: TGTTGGAATCTTTGACATTAAGTTCTGAAGAAGCTGGTCTTGAGCAACGGgtaagattcc ... ctgcatgcagCGCCTTTCAGTGATGGAGTTCCTGAACAAGCAGATAGCAGAAAAGACAACC
EST: TGTTGGAATCTTTGACATTAAGTTCTGAAGAAGCTGGTCTTGAGCAACGG CGCCTTTCAGTGATGGAGTTCCTGAACAAGCAGATAGCAGAAAAGACAACCEST: gi|28964625|gb|CB343658.1|CB343658
genomic: TGTTGGAATCTTTGACATTAAGTTCTGAAGAAGCTGGTCTTGAGCAACGGgtaagattcc ... ctgcatgcagCGCCTTTCAGTGATGGAGTTCCTGAACAAGCAGATAGCAGAAAAGACAACC
EST: TGTTGGAATCTTTGACATTAAGTTCTGAAGAAGCTGGTCTTGAGCAACGG CGCCTTTCAGTGATGGAGTTCCTGAACAAGCAGATAGCAGAAAAGACAACCEST: gi|29782979|gb|CB348769.2|CB348769
genomic: TGTTGGAATCTTTGACATTAAGTTCTGAAGAAGCTGGTCTTGAGCAACGGgtaagattcc ... ctgcatgcagCGCCTTTCAGTGATGGAGTTCCTGAACAAGCAGATAGCAGAAAAGACAACC
EST: TGTTGGAATCTTTGACATTAAGTTCTGAAGAAGCTGGTCTTGAGCAACGG CGCCTTTCAGTGATGGAGTTCCTGAACAAGCAGATAGCAGAAAAGACAACCEST: gi|352774116|gb|FQ474639.1|FQ474639
genomic: TGTTGGAATCTTTGACATTAAGTTCTGAAGAAGCTGGTCTTGAGCAACGGgtaagattcc ... ctgcatgcagCGCCTTTCAGTGATGGAGTTCCTGAACAAGCAGATAGCAGAAAAGACAACC
EST: TGTTGGAATCTTTGACATTAAGTTCTGAAGAAGCTGGTCTTGAGCAACGG CGCCTTTCAGTGATGGAGTTCCTGAACAAGCAGATAGCAGAAAAGACAACCEST: gi|110362765|gb|EC926319.1|EC926319
genomic: TGTTGGAATCTTTGACATTAAGTTCTGAAGAAGCTGGTCTTGAGCAACGGgtaagattcc ... ctgcatgcagCGCCTTTCAGTGATGGAGTTCCTGAACAAGCAGATAGCAGAAAAGACAACC
EST: TGTTGGAATCTTTGACATTAAGTTCTGAAGAAGCTGGTCTTGAGCAACGG CGCCTTTCAGTGATGGAGTTCCTGAACAAGCAGATAGCAGAAAAGACAACCEST: gi|110386747|gb|EC951369.1|EC951369
genomic: TGTTGGAATCTTTGACATTAAGTTCTGAAGAAGCTGGTCTTGAGCAACGGgtaagattcc ... ctgcatgcagCGCCTTTCAGTGATGGAGTTCCTGAACAAGCAGATAGCAGAAAAGACAACC
EST: TGTTGGAATCTTTGACATTAAGTTCTGAAGAAGCTGGTCTTGAGCAACGG CGCCTTTCAGTGATGGAGTTCCTGAACAAGCAGATAGCAGAAAAGACAACCEST: gi|71866068|gb|DT015123.1|DT015123
genomic: TGTTGGAATCTTTGACATTAAGTTCTGAAGAAGCTGGTCTTGAGCAACGGgtaagattcc ... ctgcatgcagCGCCTTTCAGTGATGGAGTTCCTGAACAAGCAGATAGCAGAAAAGACAACC
EST: TGTTGGAATCTTTGACATTAAGTTCTGAAGAAGCTGGTCTTGAGCAACGG CGCCTTTCAGTGATGGAGTTCCTGAACAAGCAGATAGCAGAAAAGACAACCEST: gi|110414144|gb|EC979970.1|EC979970
genomic: TGTTGGAATCTTTGACATTAAGTTCTGAAGAAGCTGGTCTTGAGCAACGGgtaagattcc ... ctgcatgcagCGCCTTTCAGTGATGGAGTTCCTGAACAAGCAGATAGCAGAAAAGACAACC
EST: GTTCTGAAGAAGCTGGTCTTGAGCAACGG CGCCTTTCAGTGATGGAGTTCCTGAACAAGCAGATAGCAGAAAAGACAACCEST: gi|32457102|gb|CD798276.1|CD798276
genomic: GTTCTGAAGAAGCTGGTCTTGAGCAACGGgtaagattcc ... ctgcatgcagCGCCTTTCAGTGATGGAGTTCCTGAACAAGCAGATAGCAGAAAAGACAACC
EST: TGTTGGAATCTTTGACATTAAGTTCTGAAGAAGCTGGTCTTGAGCAACGG CGCCTTTCAGTGATGGAGTTCCTGAACAAGCAGATAGCAGAAAAGACAACCEST: gi|352764964|gb|FQ473612.1|FQ473612
genomic: TGTTGGAATCTTTGACATTAAGTTCTGAAGAAGCTGGTCTTGAGCAACGGgtaagattcc ... ctgcatgcagCGCCTTTCAGTGATGGAGTTCCTGAACAAGCAGATAGCAGAAAAGACAACC
EST: TGTTGGAATCTTTGACCTTAAGTTCTGAAGAAGCTGGTCTTGAGCAACGG CGCCTTTCAGTGATGGAGTTCCTGAACAAGCAGATAGCAGAAAAGACAACCEST: gi|110363678|gb|EC927285.1|EC927285
genomic: TGTTGGAATCTTTGACATTAAGTTCTGAAGAAGCTGGTCTTGAGCAACGGgtaagattcc ... ctgcatgcagCGCCTTTCAGTGATGGAGTTCCTGAACAAGCAGATAGCAGAAAAGACAACC
EST: TGTTGGAATCTTTGACATTAAGTTCTGAAGAAGCTGGTCTTGAGCAACGG CGCCTTTCAGTGATGGAGTTCCTGAACAAGCAGATAGCAGAAAAGACAACC
genomic: TGTTGGAATCTTTGACATTAAGTTCTGAAGAAGCTGGTCTTGAGCAACGGgtaagattcc ... ctgcatgcagCGCCTTTCAGTGATGGAGTTCCTGAACAAGCAGATAGCAGAAAAGACAACC
tacagtcaactctaatcacaaattatttttacactagtattatatctgcatgcagCGCCTTTCAGTGATGGAGTTCCTGAACAAGCAGATAGCAGAAAAGACAACCTGATTCAGCTCTCTGAGGTCAG
ctctaat putative branch site (score: 3)
acaaattatttttaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagattcctctgcttgatttgatcttacagtcaactctaatcacaaattatttttacactagtattatatctgcatgcagCGCCTTTCAGTGATGGAGTTCCTGAACAAGCAGATAGCAGAAAAGACAACCTGATTCAGCTCTCTGAGGTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC