1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...aggaaaatttcacataatttattgcagtgtgttctcttaagtccatttacagtggtatgattcttagtattcaaattaatatacagttcttggagttcagGTTAAGAAACAAACTGAAGCAGCTTGCTGATCAGTACACTCTTTCAGAACAGCAATTTGCGCAGAAG
species | Vitis vinifera |
transcript | Vv13s0019g03960.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTGGAAGAGCAAAAAGACGAGTGTCTCTCCCAGCTCAAGGAGAATGAGAT GTTAAGAAACAAACTGAAGCAGCTTGCTGATCAGTACACTCTTTCAGAACAEST: gi|30326467|gb|CD009729.1|CD009729
genomic: CTGGAAGAGCAAAAAGACGAGTGTCTCTCCCAGCTCAAGGAGAATGAGATgtaagaccat ... tggagttcagGTTAAGAAACAAACTGAAGCAGCTTGCTGATCAGTACACTCTTTCAGAACA
EST: CTGGAAGAGCAAAAAGACGAGTGTCTCTCCCAGCTCAAGGAGAATGAGAT GTTAAGAAACAAACTGAAGCAGCTTGCTGATCAGTACACTCTTTCAGAACAEST: gi|110726208|gb|EE101788.1|EE101788
genomic: CTGGAAGAGCAAAAAGACGAGTGTCTCTCCCAGCTCAAGGAGAATGAGATgtaagaccat ... tggagttcagGTTAAGAAACAAACTGAAGCAGCTTGCTGATCAGTACACTCTTTCAGAACA
EST: CTGGAAGAGCAAAAAGACGAGTGTCTCTCCCAGCTCAAGGAGAATGAGAT GTTAAGAAACAAACTGAAGCAGCTTGCTGATCAGTACACTCTTTCAGAACAEST: gi|30255027|gb|CB971474.1|CB971474
genomic: CTGGAAGAGCAAAAAGACGAGTGTCTCTCCCAGCTCAAGGAGAATGAGATgtaagaccat ... tggagttcagGTTAAGAAACAAACTGAAGCAGCTTGCTGATCAGTACACTCTTTCAGAACA
EST: CTGGAAGAGCAAAAAGACGAGTGTCTCTCCCAGCTCAAGGAGAATGAGAT GTTAAGAAACAAACTGAAGCAGCTTGCTGATCAGTACACTCTTTCAGAACAEST: gi|77586923|gb|DV222608.1|DV222608
genomic: CTGGAAGAGCAAAAAGACGAGTGTCTCTCCCAGCTCAAGGAGAATGAGATgtaagaccat ... tggagttcagGTTAAGAAACAAACTGAAGCAGCTTGCTGATCAGTACACTCTTTCAGAACA
EST: CTGGAAGAGCAAAAAGACGAGTGTCTCTCCCAGCTCAAGGAGAATGAGAT GTTAAGAAACAAACTGAAGCAGCTTGCTGATCAGTACACTCTTTCAGAACAEST: gi|30254970|gb|CB971417.1|CB971417
genomic: CTGGAAGAGCAAAAAGACGAGTGTCTCTCCCAGCTCAAGGAGAATGAGATgtaagaccat ... tggagttcagGTTAAGAAACAAACTGAAGCAGCTTGCTGATCAGTACACTCTTTCAGAACA
EST: CTGGAAGAGCAAAAAGACGAGTGTCTCTCCCAGCTCAAGGAGAATGAGAT GTTAAGAAACAAACTGAAGCAGCTTGCTGATCAGTEST: gi|110727231|gb|EE103758.1|EE103758
genomic: CTGGAAGAGCAAAAAGACGAGTGTCTCTCCCAGCTCAAGGAGAATGAGATgtaagaccat ... tggagttcagGTTAAGAAACAAACTGAAGCAGCTTGCTGATCAGT
EST: CTGGAAGAGCAAAAAGACGAGTGTCTCTCCCAGCTCAAGGAGAATGAGAT GTTAAGAAACAAACTGAAGCAGCTTGCTGATCAGTACACTCTTTCAGAACA
genomic: CTGGAAGAGCAAAAAGACGAGTGTCTCTCCCAGCTCAAGGAGAATGAGATgtaagaccat ... tggagttcagGTTAAGAAACAAACTGAAGCAGCTTGCTGATCAGTACACTCTTTCAGAACA
tttacagtggtatgattcttagtattcaaattaatatacagttcttggagttcagGTTAAGAAACAAACTGAAGCAGCTTGCTGATCAGTACACTCTTTCAGAACAGCAATTTGCGCAGAAG
aattaat putative branch site (score: 3)
ttctt putative PPT
tatgattcttagtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggaaaatttcacataatttattgcagtgtgttctcttaagtccatttacagtggtatgattcttagtattcaaattaatatacagttcttggagttcagGTTAAGAAACAAACTGAAGCAGCTTGCTGATCAGTACACTCTTTCAGAACAGCAATTTGCGCAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
-ggaaaat
- - - - - cacataa
- - - - - - - - - - - - - -tgtgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - -ggtatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaattaa