Sequence
atgc intronic sequence ATGC exonic sequence...actttaaatatatataaatatatatatatatatatatatatatatatatatatatatatatatatatatatttattaacagcattgtctttgtcatgcagCCACTTCATCAAGTCAATCATCCAAGGTTTTCTTCCTGGGATTGCTCTAAAGATCTTTCTCATTTTTCTACCATCAATATTGATGCTAATGTCTAAATTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0059g01090.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os05g51630.2 (Oryza sativa), 3'ss of exon 7
-------------------------------------------------------actttaaatatatataaatatatatatatatatatatatatatatatatatatatatatatatatatatatttattaacagcattgtctttgtcatgcagCCACTTCATCAAGTCAATCATCCAAGGTTTTCTTCCTGGGATTGCTCTAAAGATCTTTCTCATTTTTCTACCATCAATATTGATGCTAATGTCTAAATTT
| | | || || ||| | || || || | |||| ||| | ||| | | | || | || || ||| || | ||||| | ||||||| ||| ||||||||||||||||||| || |||||| | ||| |||| || || || || ||| | ||| ||||| | |||||||| |||
gtaagtgtttcttcatgtgttgattatttatactattattgcatttccatgatttattcagcgtgta-attaatttgggtacat-tagacatatggttatcttctgctattcttttgaa-atgccctgataaatcttgttgact--attgtgcagTGATGTCATCAAATCATTCATCCAAGGTTTTCTTCCAGGAATTGCTTTGAAGGTCTTCCTTATATTGCTTCCAACTATACTGATGTTTATGTCTAAGTTT
upper sequence: Vv12s0059g01090.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G456000_T01 (Zea mays), 3'ss of exon 8
---actttaaat--atatataaata-tatatatatatatatatatatatatatata---tatatatatatat---atatatatttattaaca-gcattgtctt------------tgtcatgcagCCACTTCATCAAGTCAATCATCCAAGGTTTTCTTCCTGGGATTGCTCTAAAGATCTTTCTCATTTTTCTACCATCAATATTGATGCTAATGTCTAAATTT
| | || || |||| | ||| | ||| | | | || | | ||| ||| ||| | || | ||| | ||| || || || ||| |||||| | ||||| || ||| |||||||||| ||||||||||| |||||| | |||||||| || || | || ||| | ||| ||||| | ||||||||||||
gtaagtctacatccatatgttgatactttatgtcatttctttgatttcttagcatagcttatggtagtattttgaatgtccttttggtgacatgccctgatttctgcttgtaaactgttatgcagGCCATTCATTAAATCATTCATCCAAGGGTTTCTTCCTGGAATTGCTTTGAAGATCTTCCTTATAGTGCTTCCAACTATACTGATGTTTATGTCTAAATTT
upper sequence: Vv12s0059g01090.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA02G43910.2 (Glycine max), 3'ss of exon 8
-actttaaatatatataaatatatatatatatatatatatatatatatatatatatatatatata-tatatatttattaacagcattgtctttgtcatgcagCCACTTCATCAAGTCAATCATCCAAGGTTTTCTTCCTGGGATTGCTCTAAAGATCTTTCTCATTTTTCTACCATCAATATTGATGCTAATGTCTAAATTT
| | | || | || || | ||| | | || | | || | | ||| | || | | | || || | ||| | | ||| || ||||| || || | || |||||||| ||||||||||||||| | ||||| |||||||| ||||| ||| ||||||||||| ||||||| || ||
gagtgatgaaatgcaaaatgttacagataaccctgtgtagctttgataccgtaaaggtgtatgtggtagaaactaatcttatgcttctcttttat--tccagGCAATTCATAAAATCCTTTATACAAGGTTTCCTTCCTGGGATTGCTTTGAAGATATTTCTCATATTTCTGCCAGCAATATTGATGATAATGTCCAAGTTC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atatatatatatatatatatatatatttattaacagcattgtctttgtcatgcagCCACTTCATCAAGTCAATCATCCAAGGTTTTCTTCCTGGGATTGCTCTAAAGATCTTTCTCATTTTTCTACCATCAATATTGATGCTAATGTCTAAATTT
tattaac putative branch site (score: 1)
ttgtcttt putative PPT
tatatatatatatata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
actttaaatatatataaatatatatatatatatatatatatatatatatatatatatatatatatatatatttattaacagcattgtctttgtcatgcagCCACTTCATCAAGTCAATCATCCAAGGTTTTCTTCCTGGGATTGCTCTAAAGATCTTTCTCATTTTTCTACCATCAATATTGATGCTAATGTCTAAATTT
- - -aaatata