1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atcttgaaaacttgtacctttgactatcaggtctggatttggaaaaacagtactttagcatgagtatgccacaacaaaatgagcttttctacttatgcagGTGCTCTCACGGGGAAATATACGCCAGGCAATCCTCCCACTGGACCTCGAGGTCGGATTTATACCCCCGAGTTCCTAGCAAAG
species | Vitis vinifera |
transcript | Vv12s0028g01100.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTGTGATGAACTTGGGGTTACTTTGAATGCATATTCACCTATTGCTCAAG GTGCTCTCACGGGGAAATATACGEST: gi|26263992|gb|CA815055.1|CA815055
genomic: CTGTGATGAACTTGGGGTTACTTTGATTGCATATTCACCTATTGCTCAAGgtgaaattcc ... acttatgcagGTGCTCTCACGGGGAAATATACG
EST: CTGTGATGAACTTGGGGTTACTTTGATTGCATATTCACCTATTGCTCAAG GTGCTCTCACGGGGAAATATACGCCAGGCAATTCTCCCACTGGACCTCGAGEST: gi|110720549|gb|EE096568.1|EE096568
genomic: CTGTGATGAACTTGGGGTTACTTTGATTGCATATTCACCTATTGCTCAAGgtgaaattcc ... acttatgcagGTGCTCTCACGGGGAAATATACGCCAGGCAATCCTCCCACTGGACCTCGAG
EST: CTGTGATGAACTTGGGGTTACTTTGAGTGCATATTCACCTATTGCTCAAG GTGCTCTCACGGGGTAATATACGCCAGGCCATCCTCCCA
genomic: CTGTGATGAACTTGGGGTTACTTTGATTGCATATTCACCTATTGCTCAAGgtgaaattcc ... acttatgcagGTGCTCTCACGGGGAAATATACGCCAGGCAATCCTCCCA
aacagtactttagcatgagtatgccacaacaaaatgagcttttctacttatgcagGTGCTCTCACGGGGAAATATACGCCAGGCAATCCTCCCACTGGACCTCGAGGTCGGATTTATACCCCCGAGTTCCTAGCAAAG
cttttctactt CT-rich tract
aacaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcttgaaaacttgtacctttgactatcaggtctggatttggaaaaacagtactttagcatgagtatgccacaacaaaatgagcttttctacttatgcagGTGCTCTCACGGGGAAATATACGCCAGGCAATCCTCCCACTGGACCTCGAGGTCGGATTTATACCCCCGAGTTCCTAGCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- -ttgaaaa
- - - - - - - - - - - - - - -ggtctgg
- - - - - - - - - - - - - - - - - - - - - aaaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaaa