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gtaaacataacttgcaaggaattattcaataatttgccattttatcttctttgtactggacatatatttttcttgcagGCCCATTGAAAAGCTCAGGTATACTCCAAATATGAAGAAACAAATTGGCATG
species | Vitis vinifera |
transcript | Vv11s0016g04970.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGTCAGCATTTCTCACATTTGAAACCGGGTGACATTATAAAAGTGAAAGG GCCCATTGAAAAGCTCAGGTATACTCCAAATATGAAGAAACAAATTGGCATEST: gi|71884179|gb|DT033234.1|DT033234
genomic: AGTCAGCATTTCTCACATTTGAAACCGGGTGACATTATAGAAGTGAAAGGgtaaacataa ... tttcttgcagGCCCATTGAAAAGCTCAGGTATACTCCAAATATGAAGAAACAAATTGGCAT
EST: GGTGACATTATAGAAGTGAAAGG GCCCATTGAAAAGCTCAGGTATACTCCAAATATGAAGAAACAAATTGGCATEST: gi|110387459|gb|EC952124.1|EC952124
genomic: GGTGACATTATAGAAGTGAAAGGgtaaacataa ... tttcttgcagGCCCATTGAAAAGCTCAGGTATACTCCAAATATGAAGAAACAAATTGGCAT
EST: AGTCAGCATTTCTCACATTTGAAACCGGGTGACATTATAGAAGTGAAAGG GCCCATTGAAAAGCTCAGGTATACTCCAAATATGAAGAAACAAATTGGCATEST: gi|110689922|gb|EE066580.1|EE066580
genomic: AGTCAGCATTTCTCACATTTGAAACCGGGTGACATTATAGAAGTGAAAGGgtaaacataa ... tttcttgcagGCCCATTGAAAAGCTCAGGTATACTCCAAATATGAAGAAACAAATTGGCAT
EST: AGTCAGCATTTCTCACATTTGAAACCGGGTGACATTATAGAAGTGAAAGG GCCCATTGAAAAGCTCAGGTATACTCCAAATATGAAGAAACAAATTGGCATEST: gi|33401973|gb|CF207600.1|CF207600
genomic: AGTCAGCATTTCTCACATTTGAAACCGGGTGACATTATAGAAGTGAAAGGgtaaacataa ... tttcttgcagGCCCATTGAAAAGCTCAGGTATACTCCAAATATGAAGAAACAAATTGGCAT
EST: AGTCAGCATTTTTCACATTTGAAACCGGGTGACATTATAGAAGTGAAAGG GCCCATTGAAAAGCTCAGGTATACTCCAAATATGAAGAAACAAATTGGCATEST: gi|71883292|gb|DT032347.1|DT032347
genomic: AGTCAGCATTTCTCACATTTGAAACCGGGTGACATTATAGAAGTGAAAGGgtaaacataa ... tttcttgcagGCCCATTGAAAAGCTCAGGTATACTCCAAATATGAAGAAACAAATTGGCAT
EST: GAAACCGGGTGACATTATAGAAGTGAAAGG GCCCATTGAAAAGCTCAGGTATACTCCAAATATGAAGAAACAAATTGGCATEST: gi|161714699|gb|FC064483.1|FC064483
genomic: GAAACCGGGTGACATTATAGAAGTGAAAGGgtaaacataa ... tttcttgcagGCCCATTGAAAAGCTCAGGTATACTCCAAATATGAAGAAACAAATTGGCAT
EST: AGTCAGCATTTCTCACATTAGACACCGGGTGACATTATAGAAGTGAAAGG GCCCATTGAAAAGCTCACGTATACTCCAAATATGAAGAAACATATTGGCATEST: gi|351034937|gb|FQ458294.1|FQ458294
genomic: AGTCAGCATTTCTCACATTTGAAACCGGGTGACATTATAGAAGTGAAAGGgtaaacataa ... tttcttgcagGCCCATTGAAAAGCTCAGGTATACTCCAAATATGAAGAAACAAATTGGCAT
EST: AGTCAGCATTTCTCACATTTGAAACCGGGTGACATTATAGAAGTGAAAGG GCCCATTGAAAAGCTCAGGTATACTCCAAATATGAAGAAACAAATTGGCATEST: gi|33402844|gb|CF208471.1|CF208471
genomic: AGTCAGCATTTCTCACATTTGAAACCGGGTGACATTATAGAAGTGAAAGGgtaaacataa ... tttcttgcagGCCCATTGAAAAGCTCAGGTATACTCCAAATATGAAGAAACAAATTGGCAT
EST: CACATTTGAAACCGGGTGACATTATAGAAGTGAAAGG GCCCATTGAAAAGCTCAGGTATACTCCAAATATGAAGAAACAAATTGGCATEST: gi|33402755|gb|CF208382.1|CF208382
genomic: CACATTTGAAACCGGGTGACATTATAGAAGTGAAAGGgtaaacataa ... tttcttgcagGCCCATTGAAAAGCTCAGGTATACTCCAAATATGAAGAAACAAATTGGCAT
EST: AGTCAGCATTTCTCACATTTGAAACCGGGTGACATTATAGAAGTGAAAGG GCCCATTGAAAAGCTCAGGTATACTCCAAATATGAAGAAACAAATTGGCATEST: gi|110707462|gb|EE083887.1|EE083887
genomic: AGTCAGCATTTCTCACATTTGAAACCGGGTGACATTATAGAAGTGAAAGGgtaaacataa ... tttcttgcagGCCCATTGAAAAGCTCAGGTATACTCCAAATATGAAGAAACAAATTGGCAT
EST: AGTCAGCATTTCTCACATTTGAAACCGGGTGACATTATAGAAGTGAAAGG GCCCATTGAAAAGCTCAGGTATACTCCAAATATGAAGAAAC-AATTGGCATEST: gi|110728735|gb|EE104563.1|EE104563
genomic: AGTCAGCATTTCTCACATTTGAAACCGGGTGACATTATAGAAGTGAAAGGgtaaacataa ... tttcttgcagGCCCATTGAAAAGCTCAGGTATACTCCAAATATGAAGAAACAAATTGGCAT
EST: AGTCAGCATTTCTCACATTTGAAACCGGGTGACATTATAGAAGTGAAAGG GCCCATTGAAAAGCTCAGGTATACTCCAAATATGAAGAAACAAATTGGCAT
genomic: AGTCAGCATTTCTCACATTTGAAACCGGGTGACATTATAGAAGTGAAAGGgtaaacataa ... tttcttgcagGCCCATTGAAAAGCTCAGGTATACTCCAAATATGAAGAAACAAATTGGCAT
attcaataatttgccattttatcttctttgtactggacatatatttttcttgcagGCCCATTGAAAAGCTCAGGTATACTCCAAATATGAAGAAACAAATTGGCATG
tatttttctt CT-rich tract
acatatatttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaacataacttgcaaggaattattcaataatttgccattttatcttctttgtactggacatatatttttcttgcagGCCCATTGAAAAGCTCAGGTATACTCCAAATATGAAGAAACAAATTGGCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA