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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggttcttggatcttatttctctctgtattctgagagtattttagattattttactgaaaaggttttgttcattttgtgcctttttagGAGAGAATGAGAACCTACGGCGTGCCATAAGAGGGAGACAGGTTGGGAAGAAAGGGCTTCGCATACTTTCAATGGATGGGGGTGGCATGAAGGGTCTGGG

Basic information

species Vitis vinifera
transcript Vv10s0116g00830.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0116g00830.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os07g33670.1 (Oryza sativa), 3'ss of exon 7
---------gttggttcttggatcttatttctc----tctgtattctgagagtatttta-gattattt-tactgaaaaggttttgttcattttgt--gcctttttagGAGAGAATGAGAACCTACGGCGTGCCATAAGAGGGAGACAGGTTGGGAAGAAAGGGCTTCGCATACTTTCAATGGATGGGGGTGGCATGAAGGGTCTGGG
          || | |  || |||||| ||       ||  | |||   || ||||  |  | ||| | |  |||  || || ||   || |  |    | ||||||| ||||| |||||| | || || || |||||||| ||||  ||||  ||||| || || ||||| || ||||||||||| ||||||||||| || || | 
gtatgcttgttttggtactgaatcttaatttatgtgatccattttcct-gaatattcaataactatatgtgttgattagtttgtgaatatctcttcaatccttttagGTGAGAACGAGAACTTGCGTCGAGCAATAAGAGGAAGACCAGTTGCAAAGAAGGGTCTGCGCATTCTATCAATGGATGGTGGTGGCATGAAAGGCCTTGC

upper sequence: Vv10s0116g00830.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G426556_T01 (Zea mays), 3'ss of exon 6
----gttggttcttggatcttatt---tctctctgtattctgagagta-ttttagattat-tttactgaaaaggttttgttcattttgtgcctttttagGAGAGAATGAGAACCTACGGCGTGCCATAAGAGGGAGACAGGTTGGGAAGAAAGGGCTTCGCATACTTTCAATGGATGGGGGTGGCATGAAGGGTCTGGG
      | ||| ||||  |||| |     ||  |||   |    || | |  ||   ||  | |  |||   | || ||    ||||       |||||| |||||||||||| |||| || || |||||||| || |  ||||  ||||| || || ||||| || ||||||||||| ||||||||||| || || | 
gtatactagtttttggtccttactatcattccttgtgaacaatcagcagtcataacgtacatgtcttgatgtgtttatggatcttttcaaatcatttagGGGAGAATGAGAACTTACGTCGAGCAATAAGAGGAAGGCCAGTTGCAAAGAAGGGTCTACGCATCCTATCAATGGATGGTGGTGGCATGAAAGGCCTTGC

upper sequence: Vv10s0116g00830.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA17G01850.1 (Glycine max), 3'ss of exon 7
gttggttcttggatcttatttctctctgtattctgagagtattttagattattttactgaaaaggttttgttcattttgtgcctttttagGAGAGAATGAGAACCTACGGCGTGCCATAAGAGGGAGACAGGTTGGGAAGAAAGGGCTTCGCATACTTTCAATGGATGGGGGTGGCATGAAGGGTCTGGG
||| ||  | |||| | |  ||  ||| | ||    | |  ||||        |||||  |  || ||  |||||||| | | ||| ||||||| ||||| |||||  ||||||| |||| ||| ||||| || || ||| |||| ||||||||||| ||||||||||| || || ||||| ||||| | 
gtttgtcttcggatgtaaaatccatctatgtttgttgggattttttatcctgattactccatggggttc-ttcatttt-tacttttgtagGAGAAAATGAAAACCTGAGGCGTGCAATAAAAGGAAGACAAGTGGGAAAGCAAGGACTTCGCATACTCTCAATGGATGGAGGAGGAATGAAAGGTCTAGC

upper sequence: Vv10s0116g00830.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA07G38890.1 (Glycine max), 3'ss of exon 6
gttggttcttggatcttatttctctctgtattc-tgagagtattttagattattttactgaaaaggttttgttcattttgtgcctttttagGAGAGAATGAGAACCTACGGCGTGCCATAAGAGGGAGACAGGTTGGGAAGAAAGGGCTTCGCATACTTTCAATGGATGGGGGTGGCATGAAGGGTCTGGG
||| ||  | |||| | |  |   ||| | ||  |  |  | |||||   |  ||   | |   ||||   |||||||| | | ||| ||||||| ||||| |||||  ||||||| |||| ||| ||||| || || ||| |||| ||||||||||| ||||||||||| || || ||||| ||||| | 
gtttgtgttcggatataaaattcatctatgtttgtcgggatgttttatcctgattacttaatggggtt--attcatttt-tacttttgtagGAGAAAATGAAAACCTGAGGCGTGCAATAAAAGGAAGACAAGTGGGTAAGCAAGGACTTCGCATACTCTCAATGGATGGAGGAGGAATGAAAGGTCTAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agagtattttagattattttactgaaaaggttttgttcattttgtgcctttttagGAGAGAATGAGAACCTACGGCGTGCCATAAGAGGGAGACAGGTTGGGAAGAAAGGGCTTCGCATACTTTCAATGGATGGGGGTGGCATGAAGGGTCTGGG
                                       ttttgtgccttttt  CT-rich tract
     attttagattatttta  TA-rich tract