1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tccagcatgcctcatgcatttagttaaaattttattttgctctttcccaaattctattctttcaagaaataagtgctgggattttgaattgatgtcttagGTTGAAGATGATGGATCCGTGTCCAAGATCAGGCATGGAGAGACATTTGAAGACCATGTAAGGTACTTTGAGGGGCTTTGATTGTATGGTGGCAGACATT
species | Vitis vinifera |
transcript | Vv09s0070g00580.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGAGCATGGCATCATCTTACAATCTCAAGATGCGCCCACCTGAGTACTGG GTTGAAGATGATGGATCTGTGTCCAAGATCAGGCATGGAGAGACATTTGAAEST: gi|110416615|gb|EC982607.1|EC982607
genomic: TGAGCATGGCATCATCTTACAATCTCAAGATGCGCCCACCTGAGTACTGGgtatggaagt ... gatgtcttagGTTGAAGATGATGGATCCGTGTCCAAGATCAGGCATGGAGAGACATTTGAA
EST: TGAGCATGGCATCAACTTACAATCTCAAGATGCGCCCACCTGAGTACTGG GTTGAAGATGATGGATCCATGTCCAAGATCAGGCATGGAGAGACATTTGAAEST: gi|30256273|gb|CB972116.1|CB972116
genomic: TGAGCATGGCATCATCTTACAATCTCAAGATGCGCCCACCTGAGTACTGGgtatggaagt ... gatgtcttagGTTGAAGATGATGGATCCGTGTCCAAGATCAGGCATGGAGAGACATTTGAA
EST: TGAGCATGGCATCAACTTACAATCTCAAGATGCGCCCACCTGAGTACTGG GTTGAAGATGATGGATCCATGTCCAAGGTCAGGCATGGAGAGACATTTGAAEST: gi|71875503|gb|DT024558.1|DT024558
genomic: TGAGCATGGCATCATCTTACAATCTCAAGATGCGCCCACCTGAGTACTGGgtatggaagt ... gatgtcttagGTTGAAGATGATGGATCCGTGTCCAAGATCAGGCATGGAGAGACATTTGAA
EST: TGAGCATGGCATCATCTTACAATCTCAAGATGCGCCCACCTGAGTACTGG GTTGAAGATGATGGATCCGTGTCCAAGATCAGGCATGGAGAGACATTTGAA
genomic: TGAGCATGGCATCATCTTACAATCTCAAGATGCGCCCACCTGAGTACTGGgtatggaagt ... gatgtcttagGTTGAAGATGATGGATCCGTGTCCAAGATCAGGCATGGAGAGACATTTGAA
cccaaattctattctttcaagaaataagtgctgggattttgaattgatgtcttagGTTGAAGATGATGGATCCGTGTCCAAGATCAGGCATGGAGAGACATTTGAAGACCATGTAAGGTACTTTGAGGGGCTTTGATTGTATGGTGGCAGACATT
aattgat putative branch site (score: 4)
attttgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccagcatgcctcatgcatttagttaaaattttattttgctctttcccaaattctattctttcaagaaataagtgctgggattttgaattgatgtcttagGTTGAAGATGATGGATCCGTGTCCAAGATCAGGCATGGAGAGACATTTGAAGACCATGTAAGGTACTTTGAGGGGCTTTGATTGTATGGTGGCAGACATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- -agcatgc
- - - - - ctcatgc
- - - - - - - - - - - - - - - - - - - - -ctttccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgctgg