1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatgctttgtataaaattttattcagaaactcctctgatttttatatgcttctttacaattgtttccttggcaatccttgcagATGGAGTTCATGCTTGAAACCATATGCGATATAAAAAACAACAAGAAGAGAACTAAAGAGGAAACCGTACAACATACACGGATAAATAAATGGCTACAGA
species | Vitis vinifera |
transcript | Vv08s0056g01280.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGTTAAAGGCTGCCTCTGGAGATGGCGAGTCAAATATAAACAACAAAAGA ATGAAGTTCATGCTTGAAACCATATGCGATATEST: gi|28968674|gb|CB347707.1|CB347707
genomic: AGTTAAAGGCTGCCTCTGGAGATGGCGAGTCAAATATAAACAACAAAAGAgtatgctttg ... atccttgcagATGGAGTTCATGCTTGAAACCATATGCGATAT
EST: AGTTAAAGGCTGCCTCTGGAGATGGCGAGTCAAATATAAACAACAAAAGA ATGAAGTTCATGCTTGAAACCATATGCGATAT
genomic: AGTTAAAGGCTGCCTCTGGAGATGGCGAGTCAAATATAAACAACAAAAGAgtatgctttg ... atccttgcagATGGAGTTCATGCTTGAAACCATATGCGATAT
actcctctgatttttatatgcttctttacaattgtttccttggcaatccttgcagATGGAGTTCATGCTTGAAACCATATGCGATATAAAAAACAACAAGAAGAGAACTAAAGAGGAAACCGTACAACATACACGGATAAATAAATGGCTACAGA
ctctgat putative branch site (score: 4)
tccttgc putative PPT
tctgatttttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctttgtataaaattttattcagaaactcctctgatttttatatgcttctttacaattgtttccttggcaatccttgcagATGGAGTTCATGCTTGAAACCATATGCGATATAAAAAACAACAAGAAGAGAACTAAAGAGGAAACCGTACAACATACACGGATAAATAAATGGCTACAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA