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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttctgcaaggatcttttggatgtttatgagttattttgccaagttcctgccttgttgtaccttgcactgctatatcagttctctcagtaattaattaaccaaactaaaaattcatatattgcagGAAAGCTTTTAAAGGGTGAAGAACTTCCAAAAGAAGAGGTGAACTTTCAAAAGGTCTATGTTAAGGCCCCATCATTTCTTTCCATTCACATGGGGGTTAA

Basic information

species Vitis vinifera
transcript Vv08s0032g00800.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0032g00800.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA10G10990.1 (Glycine max), 3'ss of exon 7
gttagttctgcaaggatcttttggatgtttatgagttattttgccaa-gttcctgccttgttgtaccttgcactgctatatcagttctctcagtaattaattaacca--aactaaaaattcatatattgcagGAAAGCTTTTAAAGGGTGAAGAACTTCCAAAAGAAGAGGTGAACTTTCAAAAGGTCTATGTTAAGGCCCCATCATTTCTTTCCATTCACATGGGGGTTAA
||| ||||   |          | || ||||| || | |||||  ||  || |     |  | | |  |    | || |  |  |||  || ||  ||| ||||||   || |  | | |  || |||| ||||||| |  | ||||       |||||| |||||||| | |||||| || || || |||||||| || ||||| |||||||| |||||||||||||||||
gttggttccaaataa-------gaatttttataagattttttgttaatatttcaatgataatctccgatatgtttctctgcc--ttcattcggtc-ttagttaacctctaattgcataatgctacattgtagGAAAGTTACTGAAGGACATTCCACTTCCGAAAGAAGAAGAGAACTTCCAGAAAGTTTATGTTAAAGCTCCATCTTTTCTTTCAATTCACATGGGGGTTAA

upper sequence: Vv08s0032g00800.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA02G34060.1 (Glycine max), 3'ss of exon 7
gttagttctgca-aggatcttttggatgtttatgagttattttgccaagttcctgccttgttgtaccttgcactgc-tatatcagttctctcagtaattaattaaccaaactaaaaattcatatattgcagGAAAGCTTTTAAAGGGTGAAGAACTTCCAAAAGAAGAGGTGAACTTTCAAAAGGTCTATGTTAAGGCCCCATCATTTCTTTCCATTCACATGGGGGTTAA
||| ||||   | | ||  |||   | | || |  |||| | |  ||| |      ||   ||||  || | |||| |  || ||||||     ||  ||||   || || |  | | |  || |||| ||||||| |  | ||||| |    |||||| |||||||| | |||||| || || || |||||||| || ||||| |||||||| |||||||||||||||||
gttggttccaaataagaaatttcataagattttttgttaatatttcaa-tgataatctcagtgtatgtttctctgccttcattagttct-----tagctaatc--cctaattgcataatgttacattgtagGAAAGTTACTGAAGGGCGTTCCACTTCCGAAAGAAGAAGAGAACTTCCAGAAAGTTTATGTTAAAGCTCCATCTTTTCTTTCAATTCACATGGGGGTTAA

upper sequence: Vv08s0032g00800.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT1G06820.1 (Arabidopsis thaliana), 3'ss of exon 7
gttagttctgcaaggatcttttggatgtttatgagttattttgccaagttcctgccttgttgtaccttgcactgctatatcagttct-ctcagtaattaattaaccaaactaaaaattcatatattgcagGAAAGCTTTTAAAGGGTGAAGAACTTCCAAAAGAAGAGGTGAACTTTCAAAAGGTCTATGTTAAGGCCCCATCATTTCTTTCCATTCACATGGGGGTTAA
                  |    ||     |||| |||| |  |         || |  |          | |  | ||  | |  |  |  |||| |        ||  |  |  ||  | |  |  ||| ||||| ||||| || ||| | ||||| |||||||| |  || || || || || || || ||||| |||||||||||||| ||||||||||| |||||
-----------------gtaagagaaaacaatgacttatgtaactgtcgaatagcttcctaaagaaaaagaatattttacaaatcttgttttgtaagtgtacttaaaacttgtattttgctgtgctttagGGAAGCTGTTAAAAGGAGAAAAGCTTCCTAAAGAAGAAGAAAATTTCCAGAAAGTGTACGTCAAGGCTCCATCATTTCTTTCAATTCACATGGGTGTTAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110389204|gb|EC954024.1|EC954024
EST:     GTTCTTTGCCAAAACCATAGTATCTAATGCTACTAGATGGGATACATTTG                         GAAAGCTTTTAAAGGGTGAAGAACTTCCAAAAGAAGAGGTGAACTTTCAAA
genomic: GTTCTTTGCCAAAACCATAGTATCTAATGCTACTAGATGGGATACATTTGgttagttctg ... tatattgcagGAAAGCTTTTAAAGGGTGAAGAACTTCCAAAAGAAGAGGTGAACTTTCAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatatcagttctctcagtaattaattaaccaaactaaaaattcatatattgcagGAAAGCTTTTAAAGGGTGAAGAACTTCCAAAAGAAGAGGTGAACTTTCAAAAGGTCTATGTTAAGGCCCCATCATTTCTTTCCATTCACATGGGGGTTAA
                                aactaaa  putative branch site (score: 2)
                agtaattaattaacca  TA-rich tract